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List:       bioconductor
Subject:    [BioC] How to create KEGG's pathway data for SPIA?
From:       Lourdes_Peņa_Castillo <lourdes.pena () gmail ! com>
Date:       2010-11-26 1:11:37
Message-ID: AANLkTi=aZY5omoEbnX5AQmBNbH3YUoqXfubnADwfUz7P () mail ! gmail ! com
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Dear all,

I want to use SPIA to analyze expression data for rice (oriza sativa -
osa). There is KEGG's pathway data for rice,  but rice is not among those
organism in the extData directory of the SPIA package.  Does anyone has
created their own pathway data to give it as input to the function spia? If
so, what are the steps one has to follow to get the pathway data in the list
format of path.info? As reference, path.info for human can be loaded into R
like this: load(file = paste(system.file("extdata/hsaSPIA.RData", package =
"SPIA")))

Thank you!

Lourdes

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