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List: relax-users
Subject: Models tm4 to tm8 not working
From: "Tiago Pais" <tpais () domain ! hid>
Date: 2009-12-29 12:53:06
Message-ID: 3746CAEBC36C400E8BC51EC9FCCFB0F6 () domain ! hid
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Hi,
I tried to run mf_multimodel.py script with the ‘tm’ series (tm0 to tm9).
The script runs well up to ‘tm3’, after that it stops, giving the following
error message:
Traceback (most recent call last):
File "/usr/local/bin/relax", line 418, in <module>
Relax()
File "/usr/local/bin/relax", line 127, in __init__
self.interpreter.run(self.script_file)
File "/usr/local/relax/prompt/interpreter.py", line 276, in run
return run_script(intro=self.__intro_string, local=self.local,
script_file=script_file, quit=self.__quit_flag,
show_script=self.__show_script, raise_relax_error=self.__raise_relax_error)
File "/usr/local/relax/prompt/interpreter.py", line 537, in run_script
return console.interact(intro, local, script_file, quit,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/usr/local/relax/prompt/interpreter.py", line 433, in
interact_script
execfile(script_file, local)
File "mf_multimodel.py", line 68, in <module>
grid_search(inc=11)
File "/usr/local/relax/prompt/minimisation.py", line 156, in grid_search
minimise.grid_search(lower=lower, upper=upper, inc=inc,
constraints=constraints, verbosity=verbosity)
File "/usr/local/relax/generic_fns/minimise.py", line 191, in grid_search
grid_search(lower=lower, upper=upper, inc=inc, constraints=constraints,
verbosity=verbosity)
File "/usr/local/relax/specific_fns/model_free/mf_minimise.py", line 479,
in grid_search
self.minimise(min_algor='grid', lower=lower, upper=upper, inc=inc,
constraints=constraints, verbosity=verbosity, sim_index=sim_index)
File "/usr/local/relax/specific_fns/model_free/mf_minimise.py", line 789,
in minimise
model_type = self.determine_model_type()
File "/usr/local/relax/specific_fns/model_free/main.py", line 1015, in
determine_model_type
if cdp.diff_tensor.fixed:
AttributeError: 'PipeContainer' object has no attribute 'diff_tensor'
Anyone had a similar problem?
I tested each model individually with the problem showing up for models tm4
to tm8. The other models work
Cheers
TiagoP
**************************************
Tiago Pais, PhD. student
Cell Physiology & NMR
Instituto de Tecnologia Química e Biológica-Oeiras
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<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Hi,<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I tried to run mf_multimodel.py script with the ‘tm’
series (tm0 to tm9). The script runs well up to ‘tm3’, after that it
stops, giving the following error message:<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Traceback (most recent call last):<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/bin/relax", line 418, in
<module><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> Relax()<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/bin/relax", line 127, in
__init__<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> \
self.interpreter.run(self.script_file)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/relax/prompt/interpreter.py",
line 276, in run<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> return run_script(intro=self.__intro_string,
local=self.local, script_file=script_file, quit=self.__quit_flag,
show_script=self.__show_script, \
raise_relax_error=self.__raise_relax_error)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/relax/prompt/interpreter.py",
line 537, in run_script<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> return console.interact(intro, local, script_file, quit,
show_script=show_script, \
raise_relax_error=raise_relax_error)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/relax/prompt/interpreter.py",
line 433, in interact_script<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> execfile(script_file, local)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "mf_multimodel.py", line 68, in
<module><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> grid_search(inc=11)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/relax/prompt/minimisation.py",
line 156, in grid_search<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> minimise.grid_search(lower=lower, upper=upper, inc=inc,
constraints=constraints, verbosity=verbosity)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File "/usr/local/relax/generic_fns/minimise.py",
line 191, in grid_search<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> grid_search(lower=lower, upper=upper, inc=inc,
constraints=constraints, verbosity=verbosity)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File
"/usr/local/relax/specific_fns/model_free/mf_minimise.py", line 479,
in grid_search<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> self.minimise(min_algor='grid', lower=lower,
upper=upper, inc=inc, constraints=constraints, verbosity=verbosity,
sim_index=sim_index)<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File
"/usr/local/relax/specific_fns/model_free/mf_minimise.py", line 789,
in minimise<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> model_type = \
self.determine_model_type()<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> File
"/usr/local/relax/specific_fns/model_free/main.py", line 1015, in
determine_model_type<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> if cdp.diff_tensor.fixed:<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>AttributeError: 'PipeContainer' object has no attribute
'diff_tensor'<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span \
style='font-size:11.0pt'><o:p> </o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span style='font-size:11.0pt'>Anyone
had a similar problem? <o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span style='font-size:11.0pt'>I
tested each model individually with the problem showing up for models tm4 to
tm8. The other models work<o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span \
style='font-size:11.0pt'>Cheers<o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span \
style='font-size:11.0pt'>TiagoP<o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span \
style='font-size:11.0pt'><o:p> </o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span \
style='font-size:11.0pt'>**************************************<o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span style='font-size:11.0pt'>Tiago
Pais, PhD. student<o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span style='font-size:11.0pt'>Cell
Physiology & NMR<o:p></o:p></span></font></p>
<p class=MsoAutoSig><font size=2 face=Calibri><span lang=PT style='font-size:
11.0pt'>Instituto de Tecnologia Química e \
Biológica-Oeiras<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span lang=PT
style='font-size:12.0pt'><o:p> </o:p></span></font></p>
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