[prev in list] [next in list] [prev in thread] [next in thread] 

List:       relax-devel
Subject:    Re: Spectral Density Mapping
From:       "Edward d'Auvergne" <edward.dauvergne () domain ! hid>
Date:       2009-08-24 18:04:21
Message-ID: 7f080ed10908241104y4701b6c7xfc5bcb0c3a0b63a0 () domain ! hid
[Download RAW message or body]

Hi,

I've now fixed this issue in the repository.  You can download the
fixed script from:

http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/jw_mapping.py?rev=9377&view=log

Hopefully this will now function correctly for you.

Regards,

Edward


2009/8/24 Edward d'Auvergne <edward.dauvergne@domain.hid>:
> Hi,
>
> I've had a look, and the sample_scripts/jw_mapping.py script is out of
> date.  It is still in the ancient relax 1.2 format!  I'll fix this in
> the repository, and then send the link so you can download the fixed
> version.  If you would like to beat me to it, have a look at the
> script test_suite/system_tests/scripts/jw_mapping.py as this system
> test is fully functional with relax 1.3.
>
> Regards,
>
> Edward
>
>
>
> 2009/8/24 Leao Lagarto <dodgy_spin@domain.hid>:
>> Dear Dr. Edward
>> Thank you very much for promptly answer.
>> The relax version that I am using is the Mac OS X relax-py24 and indeed
>> is the version relax 1.3.4.
>> I have also try to install the source code relax-1.3.4 and I still have
>> the same error.
>> So, do you have any idea how can I sort out my problem?
>>
>> Many Thanks.
>>
>>
>>
>> --- On Fri, 21/8/09, Edward d'Auvergne <edward.dauvergne@domain.hid> wrote:
>>
>> From: Edward d'Auvergne <edward.dauvergne@domain.hid>
>> Subject: Re: Spectral Density Mapping
>> To: "Leao Lagarto" <dodgy_spin@domain.hid>
>> Cc: relax-devel@domain.hid
>> Date: Friday, 21 August, 2009, 2:51 PM
>>
>> Dear Leao,
>>
>> Welcome to the relax mailing lists!  First of all, I would like to ask
>> which version of relax you are using?  From the message, I would guess
>> a 1.2 version.  For spectral density mapping (and generally) I would
>> recommend using relax version 1.3.4.  For most analyses, this version
>> is very stable and has many bugs fixed that the 1.2 version does not.
>> Note that the difference between 1.2 and 1.3 is about 3 to 4 years, so
>> the 1.2 code is now quite ancient.  Could you test and see if the
>> problem you are seeing is present if you use relax-1.3.4?
>>
>> Cheers,
>>
>> Edward
>>
>>
>>
>> 2009/8/21 Leao Lagarto <dodgy_spin@domain.hid>:
>>> Dear Relax Fellows
>>>
>>>
>>>
>>> I would like to ask some help to deal with the jw_mapping.py script.
>>>
>>> Once I am novice in this program I will explain in detail my problem:
>>>
>>> On my home/data directory I have my r1, r2 and noe data measured at one
>>> magnetic field in the following format:
>>>
>>>
>>>
>>> noe.600.out file:
>>>
>>>
>>>
>>> Num Name Value Error
>>>
>>> 1       MET  None  None
>>>
>>> 2       GLU   0.5703  0.1234
>>>
>>> 3       LEU    ...         ....
>>>
>>>
>>>
>>> when I try to run the relax python script (jw_mapping.py) I get the
>>> following message:
>>>
>>> "RelaxError: The sequence data does not exist."
>>>
>>> The sequence if I am not wrong is load from: sequence.read(name,
>>> 'noe.600.out') but even with a new file only with the sequence I still get
>>> the same kind of error.
>>>
>>>
>>>
>>> So I don't understand what I am doing wrong; if anybody could help me I
>>> would be very pleased.
>>>
>>>
>>>
>>> Best regards
>>>
>>> _______________________________________________
>>> relax (http://nmr-relax.com)
>>>
>>> This is the relax-devel mailing list
>>> relax-devel@domain.hid
>>>
>>> To unsubscribe from this list, get a password
>>> reminder, or change your subscription options,
>>> visit the list information page at
>>> https://mail.gna.org/listinfo/relax-devel
>>>
>>>
>>
>>
>


[prev in list] [next in list] [prev in thread] [next in thread]