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List:       r-sig-mac
Subject:    Re: [R-SIG-Mac] R.app crashing
From:       Simon Urbanek <simon.urbanek () r-project ! org>
Date:       2013-04-18 16:00:48
Message-ID: 4A14F6F5-C506-4B06-A16F-D9AF7EF345CF () r-project ! org
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On Apr 16, 2013, at 5:35 AM, Prof Brian Ripley wrote:

> That log says
> 
> Library not loaded: \
> /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib 
> '3.1' means R-devel, not 3.0.0 and not R-patched.
> 
> I can confirm this from today's R-patched: it looks like the wrong version of R.app \
> got bundled: 
> tystie% otool -L /Applications/R.app/Contents/MacOS/R
> /Applications/R.app/Contents/MacOS/R:
> 	/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib \
> (compatibility version 3.1.0, current version 3.1.0) 

I had fixed it the same day (one of the build scripts was inadvertently trying to do \
too many things at once), but the post got stuck in my mailer.


> However, reverting to 3.0.0 should work.  One issue (and did we not see a report \
> from you about it?) is that the installer does not necessarily replace the copy of \
> R.app in /Applications if it finds another one. (That has happened to me when the \
> one I last used was a personal build.)  So I would remove all copies of R.app from \
> your system and re-install 3.0.0. 

I have now marked R.app as not relocatable which *should* make the Installer less \
zealous in finding the wrong R.app binary. This means that once you move R.app it \
won't be upgraded, but you can at least rely on the fact that /Applications/R.app \
will be the location of the R.app after you installed it.

Thanks,
Simon



> 
> 
> On 16/04/2013 09:28, Ken Knoblauch wrote:
> > Hi,
> > 
> > I went to upgrade a working R 3.0.0 to the patched version and I'm
> > finding that
> > I can't open it.  I went back and downloaded the unpatched version and
> > find the same problem.  I can open R in the terminal, so sounds like
> > a problem with R.app.
> > 
> > I'm on a Mac Air running OS 10.7.5.  From the terminal:
> > 
> > sessionInfo()
> > R version 3.0.0 (2013-04-03)
> > Platform: x86_64-apple-darwin10.8.0 (64-bit)
> > 
> > locale:
> > [1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8
> > 
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> > 
> > The crash log is the following:
> > 
> > Process:         R [3611]
> > Path:            /Applications/R.app/Contents/MacOS/R
> > Identifier:      org.R-project.R
> > Version:         R 3.0.0 GUI 1.60 Snow Leopard build (6480)
> > Code Type:       X86-64 (Native)
> > Parent Process:  launchd [109]
> > 
> > Date/Time:       2013-04-16 10:12:24.774 +0200
> > OS Version:      Mac OS X 10.7.5 (11G63b)
> > Report Version:  9
> > 
> > Interval Since Last Report:          554272 sec
> > Crashes Since Last Report:           31
> > Per-App Crashes Since Last Report:   5
> > Anonymous UUID:                      938B8307-E22B-4402-A8AA-4E9401361605
> > 
> > Crashed Thread:  0
> > 
> > Exception Type:  EXC_BREAKPOINT (SIGTRAP)
> > Exception Codes: 0x0000000000000002, 0x0000000000000000
> > 
> > Application Specific Information:
> > dyld: launch, loading dependent libraries
> > 
> > Dyld Error Message:
> > Library not loaded:
> > /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
> > Referenced from: /Applications/R.app/Contents/MacOS/R
> > Reason: image not found
> > 
> > Binary Images:
> > 0x100000000 -        0x100098fef +org.R-project.R (R 3.0.0 GUI
> > 1.60 Snow Leopard build - 6480) <CF67A542-FD9A-3A86-B869-FB06FE012513>
> > /Applications/R.app/Contents/MacOS/R
> > 0x7fff65061000 -     0x7fff65095baf  dyld (195.6 - ???)
> > <0CD1B35B-A28F-32DA-B72E-452EAD609613> /usr/lib/dyld
> > 
> > Model: MacBookAir4,1, BootROM MBA41.0077.B0F, 2 processors, Intel Core
> > i5, 1.6 GHz, 4 GB, SMC 1.74f4
> > Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 384 MB
> > Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
> > 0x4D34373142353737334448302D4348392020
> > Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
> > 0x4D34373142353737334448302D4348392020
> > AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9),
> > Broadcom BCM43xx 1.0 (5.106.198.19.22)
> > Bluetooth: Version 4.0.8f17, 2 service, 11 devices, 1 incoming serial ports
> > Network Service: Ethernet, Ethernet, en0
> > Serial ATA Device: APPLE SSD TS128C, 121,33 GB
> > USB Device: FaceTime Camera (Built-in), apple_vendor_id, 0x850a,
> > 0xfa200000 / 3
> > USB Device: hub_device, 0x0424  (SMSC), 0x2513, 0xfa100000 / 2
> > USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x024a,
> > 0xfa120000 / 5
> > USB Device: BRCM20702 Hub, 0x0a5c  (Broadcom Corp.), 0x4500, 0xfa110000 / 4
> > USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x821f,
> > 0xfa113000 / 7
> > USB Device: hub_device, 0x0424  (SMSC), 0x2513, 0xfd100000 / 2
> > 
> > Thanks.
> > 
> > Ken
> > 
> 
> 
> -- 
> Brian D. Ripley,                  ripley@stats.ox.ac.uk
> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> University of Oxford,             Tel:  +44 1865 272861 (self)
> 1 South Parks Road,                     +44 1865 272866 (PA)
> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
> 
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> R-SIG-Mac@r-project.org
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> 

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