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List:       r-sig-mac
Subject:    Re: [R-SIG-Mac] R 3.0.0 from command line: /Library/..../x86_64/ldpaths: No such file or directory
From:       Karl Broman <kbroman () biostat ! wisc ! edu>
Date:       2013-04-11 14:02:07
Message-ID: AA1E347D-9F99-49AE-A7DE-30048672DA6B () biostat ! wisc ! edu
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Ah; I had "export R_ARCH=/x86_64" in my .bashrc file; I removed that and now it runs \
fine.

thanks, Simon, for your help!
karl


On Apr 11, 2013, at 8:59 AM, Simon Urbanek <simon.urbanek@r-project.org> wrote:

> On Apr 11, 2013, at 9:53 AM, Karl Broman wrote:
> 
> > I removed /usr/bin/R and re-installed, but I still have the same problem.
> > 
> 
> If in doubt, blow away the whole /Library/Frameworks/R.framework
> 
> What happens is that you're running R with R_ARCH=/x86_64 set which is how R 2.x \
> was run but R 3.x is no longer multi-arch. The question is where is that set? Look \
> at the /usr/bin/R script - in line 46 there should be : ${R_ARCH=}
> and check that you're not setting R_ARCH in your environment.
> 
> Cheers
> S
> 
> 
> > /usr/bin/R is a soft link that seems to be pointing to the right place.  
> > 
> > [fig]~[501]$ ls -l /usr/bin/R
> > lrwxr-xr-x  1 root  wheel  47 Apr 11 08:44 /usr/bin/R@ -> \
> > /Library/Frameworks/R.framework/Resources/bin/R 
> > [fig]~[502]$ ls -l /Library/Frameworks/R.framework/Resources
> > lrwxr-xr-x  1 root  admin  26 Apr 11 08:44 \
> > /Library/Frameworks/R.framework/Resources@ -> Versions/Current/Resources 
> > [fig]~[503]$ ls -l /Library/Frameworks/R.framework/Versions/Current
> > lrwxr-xr-x  1 root  admin  3 Apr 11 08:44 \
> > /Library/Frameworks/R.framework/Versions/Current@ -> 3.0 
> > [fig]~[504]$ ls -l /Library/Frameworks/R.framework/Versions/3.0/Resources/etc/
> > /total 48
> > -rw-rw-r--  1 root  admin  5679 Apr  3 08:10 Makeconf
> > -rw-rw-r--  1 root  admin  1570 Apr  3 08:10 Renviron
> > -rw-rw-r--  1 root  admin   165 Apr  3 08:10 javaconf
> > -rw-rw-r--  1 root  admin   639 Apr  3 08:10 ldpaths
> > -rw-rw-r--  1 root  admin  1159 Apr  3 08:10 repositories
> > 
> > thanks,
> > karl
> > 
> > On Apr 11, 2013, at 8:40 AM, Simon Urbanek <simon.urbanek@r-project.org> wrote:
> > 
> > > On Apr 11, 2013, at 9:29 AM, Karl Broman wrote:
> > > 
> > > > I can't get R 3.0.0 to run from the command line on my Macs.  I get the \
> > > > following error. 
> > > > $ R --version
> > > > /usr/bin/R: line 236: \
> > > > /Library/Frameworks/R.framework/Resources/etc/x86_64/ldpaths: No such file or \
> > > > directory 
> > > > It works fine within RStudio or with the R GUI.
> > > > I'm running Mac OS X version 10.8.3.
> > > > 
> > > > Any suggestions of what's going wrong?
> > > > 
> > > 
> > > Yes, you have R startup script from an old version of R. Remove /usr/bin/R and \
> > > re-install R. 
> > > Cheers,
> > > S
> > > 
> > > 
> > > 
> > > > thanks,
> > > > karl
> > > > ----
> > > > Karl Broman | http://www.biostat.wisc.edu/~kbroman
> > > > 
> > > > > R.Version()
> > > > $platform
> > > > [1] "x86_64-apple-darwin10.8.0"
> > > > 
> > > > $version.string
> > > > [1] "R version 3.0.0 Patched (2013-04-10 r62546)"
> > > > 
> > > > _______________________________________________
> > > > R-SIG-Mac mailing list
> > > > R-SIG-Mac@r-project.org
> > > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> > > > 
> > > > 
> > > 
> > 
> > 
> 

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