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List: r-sig-mac
Subject: Re: [R-SIG-Mac] R console
From: Rob Goedman <goedman () mac ! com>
Date: 2012-08-25 20:18:29
Message-ID: 8D35BD4C-4432-4F05-A1B6-66876F336B88 () mac ! com
[Download RAW message or body]
[Attachment #2 (multipart/alternative)]
Hi Weiwei,
After following your (Weiwei Shi's) steps exactly, I can reproduce the problem on \
Mountain Lion 10.8.1 with R-2.16.
It's kind of annoying that I've not been able to ever again get anything else as \
below exception (the 4 dreaded questions).
Also attached a core dump.
I removed any history and .RData files, tried resetting it by moving the preferences \
out of the way. XQuartz 2.7.2. is happily running. Same with R.app GUI version 6240 \
(after fixing a small typo in the latest commit: i -> index).
Regards,
Rob
Rob J. Goedman
goedman@mac.com
On Aug 24, 2012, at 7:51 AM, Weiwei Shi <helprhelp@gmail.com> wrote:
> Hi,
>
> I am using OS X 10.8 and have XQuartz installed. I can still reproduce the
> errors. Do you think R for mac will correct that problem?
>
> To make the problem clear again, if you click the "startup" under the top
> bar (below the "General"), the problem comes out; while if you directly
> click on Startup on the bar menu, it is fine.
>
>
> Thanks,
>
> Weiwei
>
>
> On Fri, Aug 24, 2012 at 10:27 AM, Simon Urbanek <Simon.Urbanek@r-project.org
> > wrote:
>
> > On Aug 24, 2012, at 8:42 AM, Marc Schwartz <marc_schwartz@me.com> wrote:
> >
> > >
> > > On Aug 24, 2012, at 7:03 AM, Noia Raindrops <noia.raindrops@gmail.com>
> > wrote:
> > >
> > > > Hello,
> > > >
> > > > I thing you need to install X11.app.
> > > > see: http://support.apple.com/kb/HT5293
> > >
> > >
> > > Strictly speaking, that is only needed on Mountain Lion, as prior
> > versions of OSX include X11 on the installation DVD/DMG.
> > >
> > > I don't use the R OSX GUI, but Emacs/ESS. That being said, I can
> > replicate the problem on Mountain Lion (10.8.1) with XQuartz installed.
> > >
> > > If Weiwei is using ML, then he should install the above, however note
> > that the name of the app is now XQuartz.app and not X11.app. So even if
> > installed, the GUI icon selection will still fail.
> > >
> > > If Weiwei is not using ML, then X11 is available on the installation
> > DVD on pre-Lion versions of OSX, or if on Lion (10.7) it is available from
> > the 'Packages' folder on the install DMG.
> > >
> > > I am adding John Fox as a cc: to this e-mail as in the course of
> > searching, I noted the R Commander installation instructions (
> > http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html),
> > which includes mention of X11.app, but not XQuartz.app for Mountain Lion.
> > So that page and related documentation will need to be updated.
> > >
> >
> > ... and just to be explicit - there is no X11 on OS X 10.8 anymore. Apple
> > has removed it from the OS and no longer supports it.
> >
> > One X11 build is available as 3rd party download from
> > http://xquartz.macosforge.org but it is no longer Apple's X11 as included
> > in previous OS X versions. The current R GUI release only supports Apple's
> > X11 (i.e., the autostart etc.; you can still use X11 R packages with any
> > X11 implementation).
> >
>
>
>
> --
> Weiwei Shi, Ph.D
> Research Scientist
>
>
> "Did you always know?"
> "No, I did not. But I believed..."
> ---Matrix III
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
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<html><head><meta http-equiv="Content-Type" content="text/html \
charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: \
space; -webkit-line-break: after-white-space; ">Hi Weiwei,<div><br></div><div>After \
following your (Weiwei Shi's) steps exactly, I can reproduce the problem on Mountain \
Lion 10.8.1 with R-2.16.</div><div><br></div><div>It's kind of annoying that I've not \
been able to ever again get anything else as below exception (the 4 dreaded \
questions).</div><div><br></div><div>Also attached a core \
dump.</div><div><br></div><div>I removed any history and .RData files, tried \
resetting it by moving the preferences out of the way. XQuartz 2.7.2. is happily \
running. Same with R.app GUI version 6240 (after fixing a small typo in the \
latest commit: i -> \
index).</div><div><br></div><div>Regards,</div><div>Rob</div><div><br><div \
apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: \
separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; \
font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: \
normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; \
white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: \
0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; \
-webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; \
"><div>Rob J. Goedman</div><div><a \
href="mailto:goedman@mac.com">goedman@mac.com</a></div><div><br></div></span></div></div></body></html>
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["R64.dump.txt" (text/plain)]
Process: R [5591]
Path: /Applications/R64.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R for Mac OS X GUI 1.53-devel Leopard build 64-bit (6237)
Code Type: X86-64 (Native)
Parent Process: launchd [140]
User ID: 501
Date/Time: 2012-08-25 12:51:02.082 -0700
OS Version: Mac OS X 10.8.1 (12B19)
Report Version: 10
Interval Since Last Report: 32314 sec
Crashes Since Last Report: 1
Per-App Interval Since Last Report: 123 sec
Per-App Crashes Since Last Report: 1
Anonymous UUID: 3EA6360D-A4FC-476B-B5F3-6FD4473393CE
Crashed Thread: 1
Exception Type: EXC_CRASH (SIGSEGV)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Thread 0:: Dispatch queue: com.apple.main-thread
0 libR.dylib 0x00000001001c3547 Rf_findVar + 23 (envir.c:1083)
1 libR.dylib 0x000000010020da45 setup_Rmainloop + 1365 \
(main.c:943)
Thread 1 Crashed:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 2:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff923e5d16 kevent + 10
1 libdispatch.dylib 0x00007fff940e3e26 _dispatch_mgr_invoke + 883
2 libdispatch.dylib 0x00007fff940e3a2a _dispatch_mgr_thread + 54
Thread 3:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 4:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 5:: com.apple.NSURLConnectionLoader
0 libsystem_kernel.dylib 0x00007fff923e3686 mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff923e2c42 mach_msg + 70
2 com.apple.CoreFoundation 0x00007fff8b72af23 __CFRunLoopServiceMachPort + \
195 3 com.apple.CoreFoundation 0x00007fff8b730606 __CFRunLoopRun + 1078
4 com.apple.CoreFoundation 0x00007fff8b72fdd2 CFRunLoopRunSpecific + 290
5 com.apple.Foundation 0x00007fff8ab7d7d6 +[NSURLConnection(Loader) \
_resourceLoadLoop:] + 356 6 com.apple.Foundation 0x00007fff8abdb842 \
__NSThread__main__ + 1345 7 libsystem_c.dylib 0x00007fff9543e782 \
_pthread_start + 327 8 libsystem_c.dylib 0x00007fff9542b1c1 \
thread_start + 13
Thread 6:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 7:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 8:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 9:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 10:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 11:
0 libsystem_kernel.dylib 0x00007fff923e5322 __select + 10
1 org.R-project.R 0x0000000100011e06 -[RController readThread:] + \
550 2 com.apple.Foundation 0x00007fff8abdb842 __NSThread__main__ + 1345
3 libsystem_c.dylib 0x00007fff9543e782 _pthread_start + 327
4 libsystem_c.dylib 0x00007fff9542b1c1 thread_start + 13
Thread 12:
0 libsystem_kernel.dylib 0x00007fff923e56d6 __workq_kernreturn + 10
1 libsystem_c.dylib 0x00007fff95440f2c _pthread_workq_return + 25
2 libsystem_c.dylib 0x00007fff95440cf3 _pthread_wqthread + 412
3 libsystem_c.dylib 0x00007fff9542b1b1 start_wqthread + 13
Thread 1 crashed with X86 Thread State (64-bit):
rax: 0x0000000002000170 rbx: 0x0000000101281000 rcx: 0x0000000101280ee8 rdx: \
0x0000000000000000 rdi: 0x0000000000000004 rsi: 0x0000000000000000 rbp: \
0x0000000101280f00 rsp: 0x0000000101280ee8 r8: 0x0000000000070002 r9: \
0x0000000000000000 r10: 0x0000000000000000 r11: 0x0000000000000246 r12: \
0x0000000000000001 r13: 0x0000000000000000 r14: 0x0000000101281000 r15: \
0x0000000000000000 rip: 0x00007fff923e56d6 rfl: 0x0000000000000246 cr2: \
0x0000000106deaf80 Logical CPU: 0
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(322) <C1321292-F5D3-3B8F-8CBB-57AC8E05F90C> \
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/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
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/System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
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0x7fff9114efff com.apple.CoreServices.OSServices (557 - 557) \
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0x7fff91420000 - 0x7fff923d2ff7 com.apple.WebCore (8536 - 8536.24) \
<A890E18B-9224-38B3-ADFB-C84B3BCD2AAC> \
/System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
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<F646589B-13F8-3685-8C17-92C77993AE86> /usr/lib/system/libsystem_kernel.dylib \
0x7fff923ef000 - 0x7fff9259dfff com.apple.QuartzCore (1.8 - 304.0) \
<BDC66714-F60C-386D-A773-F897D1E87AB6> \
/System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore 0x7fff9259e000 \
- 0x7fff925b1ff7 com.apple.LangAnalysis (1.7.0 - 1.7.0) \
<2F2694E9-A7BC-33C7-B4CF-8EC907DF0FEB> \
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
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<B8DE45D7-1827-3379-A478-1A574A1D11D9> \
/System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
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<49C4A53E-9239-3B9A-95DC-8C7B398E491D> \
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x7fff92954000 - 0x7fff92d70fff FaceCoreLight (2.0.1) \
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<11507A03-9165-350C-9492-A545EA7331BD> \
/System/Library/PrivateFrameworks/CoreServicesInternal.framework/Versions/A/CoreServicesInternal
0x7fff92e16000 - 0x7fff93034fff com.apple.CoreData (106 - 407.5) \
<45EF39FE-7FD6-366E-BB5C-3E86E0B7DA3C> \
/System/Library/Frameworks/CoreData.framework/Versions/A/CoreData 0x7fff93035000 - \
0x7fff931d0fef com.apple.vImage (6.0 - 6.0) <FAE13169-295A-33A5-8E6B-7C2CC1407FA7> \
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff9355a000 - 0x7fff937ceff7 com.apple.RawCamera.bundle (3.14.2 - 644) \
<11978DA8-3427-33FB-95BD-315608107265> \
/System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera \
0x7fff937cf000 - 0x7fff93824ff7 libTIFF.dylib (843) \
<4EB491F3-8DA4-3E4F-AE83-E207720F38B3> \
/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib \
0x7fff93825000 - 0x7fff93927fff libcrypto.0.9.8.dylib (47) \
<74F165AD-4572-3B26-B0E2-A97477FE59D0> /usr/lib/libcrypto.0.9.8.dylib 0x7fff93a10000 \
- 0x7fff93a18fff liblaunch.dylib (442.21) <224CB010-6CF8-3FC2-885C-6F80330321EB> \
/usr/lib/system/liblaunch.dylib 0x7fff93a53000 - 0x7fff93a55fff \
com.apple.securityhi (4.0 - 55002) <34E45C60-DC7E-3FCC-A1ED-EBF48B77C559> \
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff93a56000 - 0x7fff93a91fff com.apple.LDAPFramework (2.4.28 - 194.5) \
<012E3038-92EA-3DC8-82B1-A71462DDAE9E> \
/System/Library/Frameworks/LDAP.framework/Versions/A/LDAP 0x7fff93a92000 - \
0x7fff93a9dfff com.apple.CommonAuth (3.0 - 2.0) \
<74A86DDD-57D0-3178-AB74-E1F31DBFFC39> \
/System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth \
0x7fff93a9e000 - 0x7fff93edafff com.apple.VideoToolbox (1.0 - 926.37) \
<2C623B6A-42C1-30C3-93A6-0A10880D07D3> \
/System/Library/Frameworks/VideoToolbox.framework/Versions/A/VideoToolbox \
0x7fff93edb000 - 0x7fff93eedff7 libz.1.dylib (43) \
<2A1551E8-A272-3DE5-B692-955974FE1416> /usr/lib/libz.1.dylib 0x7fff93eee000 - \
0x7fff93f4aff7 com.apple.Symbolication (1.3 - 93) \
<F2C7E0B6-B241-3020-B30A-0636D0FA3378> \
/System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication \
0x7fff93f4b000 - 0x7fff93f4bfff com.apple.vecLib (3.8 - vecLib 3.8) \
<794317C7-4E38-338A-A874-5E18001C8503> \
/System/Library/Frameworks/vecLib.framework/Versions/A/vecLib 0x7fff93f4c000 - \
0x7fff93f5fff7 libbsm.0.dylib (32) <F497D3CE-40D9-3551-84B4-3D5E39600737> \
/usr/lib/libbsm.0.dylib 0x7fff93f60000 - 0x7fff93f67fff libcopyfile.dylib (89) \
<876573D0-E907-3566-A108-577EAD1B6182> /usr/lib/system/libcopyfile.dylib \
0x7fff93f68000 - 0x7fff94082fff com.apple.coreavchd (5.6.0 - 5600.4.16) \
<0CF2ABE5-B088-3B5D-9C04-47AE708ADAE3> \
/System/Library/PrivateFrameworks/CoreAVCHD.framework/Versions/A/CoreAVCHD \
0x7fff940c7000 - 0x7fff940defff com.apple.GenerationalStorage (1.1 - 132.1) \
<EAB41613-0145-3CE5-AA60-A8A791A3EE22> \
/System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage
0x7fff940df000 - 0x7fff940f4ff7 libdispatch.dylib (228.18) \
<0B6B6E7F-4D8A-3F3B-A4BF-6CF34638DBBB> /usr/lib/system/libdispatch.dylib \
0x7fff940f5000 - 0x7fff9427efff com.apple.WebKit (8536 - 8536.25) \
<6827B87B-9921-3E69-80A6-115ED325DBA4> \
/System/Library/Frameworks/WebKit.framework/Versions/A/WebKit 0x7fff9427f000 - \
0x7fff94283fff com.apple.IOSurface (86.0.2 - 86.0.2) \
<739A481A-DF06-39EB-B784-D03BA1CBD762> \
/System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface 0x7fff942b7000 - \
0x7fff94313fff com.apple.QuickLookFramework (4.0 - 555.0) \
<8B163B8C-001E-3BBB-98ED-8173C68BC84C> \
/System/Library/Frameworks/QuickLook.framework/Versions/A/QuickLook 0x7fff94314000 - \
0x7fff94315ff7 libremovefile.dylib (23.1) <DBBFAF35-AC78-3856-92F6-6E4FD9DF14A2> \
/usr/lib/system/libremovefile.dylib 0x7fff94322000 - 0x7fff9437cfff \
com.apple.print.framework.PrintCore (8.0 - 387) \
<3CA8A004-8F93-3936-9F9E-7030BD474D2B> \
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x7fff943a5000 - 0x7fff943a8fff libRadiance.dylib (843) \
<61405840-A8B0-368E-B39A-704B5A04FDA5> \
/System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib \
0x7fff943e7000 - 0x7fff943eaff7 libdyld.dylib (210.2.3) \
<F59367C9-C110-382B-A695-9035A6DD387E> /usr/lib/system/libdyld.dylib 0x7fff9444c000 \
- 0x7fff9444cfff com.apple.Carbon (154 - 155) \
<372716D2-6FA1-3611-8501-3DD1D4A6E8C8> \
/System/Library/Frameworks/Carbon.framework/Versions/A/Carbon 0x7fff9444d000 - \
0x7fff95077fff com.apple.AppKit (6.8 - 1187) <C9309F5C-9441-3E5B-A120-B03FEDDA63F9> \
/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit 0x7fff95078000 - \
0x7fff9507bfff com.apple.AppleSystemInfo (2.0 - 2) \
<BC221376-361F-3F85-B284-DC251D3BB442> \
/System/Library/PrivateFrameworks/AppleSystemInfo.framework/Versions/A/AppleSystemInfo
0x7fff9507c000 - 0x7fff951ccfff com.apple.audio.toolbox.AudioToolbox (1.8 - \
1.8) <8019964B-4FFB-3328-A425-B1A702177A25> \
/System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox \
0x7fff951e9000 - 0x7fff951f6fff libbz2.1.0.dylib (29) \
<CE9785E8-B535-3504-B392-82F0064D9AF2> /usr/lib/libbz2.1.0.dylib 0x7fff951f7000 - \
0x7fff95248fff com.apple.SystemConfiguration (1.12 - 1.12) \
<7A8300B5-F5B3-39F0-A4B2-4C0C293FA29F> \
/System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x7fff95363000 - 0x7fff95367ff7 com.apple.CommonPanels (1.2.5 - 94) \
<AAC003DE-2D6E-38B7-B66B-1F3DA91E7245> \
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff95368000 - 0x7fff95368fff com.apple.ApplicationServices (45 - 45) \
<A3ABF20B-ED3A-32B5-830E-B37831A45A80> \
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff95369000 - 0x7fff9536bff7 libunc.dylib (25) \
<92805328-CD36-34FF-9436-571AB0485072> /usr/lib/system/libunc.dylib 0x7fff9536c000 - \
0x7fff95429ff7 com.apple.ColorSync (4.8.0 - 4.8.0) \
<6CE333AE-EDDB-3768-9598-9DB38041DC55> \
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x7fff9542a000 - 0x7fff954f6fef libsystem_c.dylib (825.24) \
<16B6B86C-53EE-36E8-AC2B-4AADC1008098> /usr/lib/system/libsystem_c.dylib \
0x7fff954f7000 - 0x7fff9553ffff com.apple.framework.CoreWiFi (1.0 - 100.10) \
<0E863B4A-1094-3F8D-BEDE-D99537E9C588> \
/System/Library/Frameworks/CoreWiFi.framework/Versions/A/CoreWiFi 0x7fff9554d000 - \
0x7fff9555cff7 com.apple.opengl (1.8.5 - 1.8.5) \
<C554C4DA-517D-3F77-BC7E-DDFD9E01A891> \
/System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff95575000 - \
0x7fff95665ff7 com.apple.DiskImagesFramework (10.8 - 344) \
<3A30B9B5-5099-35E2-9DCD-C96764FA2D26> \
/System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages \
0x7fff95666000 - 0x7fff956a0fff com.apple.GSS (3.0 - 2.0) \
<0BDF8090-5EF4-3759-94DE-8521D74188AA> \
/System/Library/Frameworks/GSS.framework/Versions/A/GSS 0x7fff957cb000 - \
0x7fff957cbffd com.apple.audio.units.AudioUnit (1.8 - 1.8) \
<ECC4891A-9BA8-3C13-9A2B-6116521B7B46> \
/System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit 0x7fff95cf1000 - \
0x7fff95e0aff7 com.apple.ImageIO.framework (3.2.0 - 843) \
<A9AC2A79-331A-3B06-AFE6-7E34EF876221> \
/System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO 0x7fff95e48000 - \
0x7fff95e5cfff com.apple.speech.synthesis.framework (4.1.10 - 4.1.10) \
<21086D96-F997-38D3-BB59-8600CCC3A36F> \
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x7fff95e5f000 - 0x7fff95ee1fff com.apple.Heimdal (3.0 - 2.0) \
<660A6C64-4912-32C8-A332-B64164032A2D> \
/System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 5645
thread_create: 1
thread_set_state: 348
VM Region Summary:
ReadOnly portion of Libraries: Total=208.4M resident=102.3M(49%) \
swapped_out_or_unallocated=106.1M(51%) Writable regions: Total=1.1G written=13.4M(1%) \
resident=62.9M(5%) swapped_out=0K(0%) unallocated=1.1G(95%)
REGION TYPE VIRTUAL
=========== =======
CG backing stores 9492K
CG image 1084K
CG raster data 496K
CG shared images 1216K
CoreAnimation 280K
CoreImage 20K
CoreServices 5520K
JS JIT generated code 8K
JS JIT generated code (reserved) 1.0G reserved VM address space \
(unallocated) MALLOC 106.3M
MALLOC guard page 48K
Memory tag=240 4K
Memory tag=242 12K
Memory tag=251 16K
OpenCL 88K
SQLite page cache 192K
STACK GUARD 56.0M
Stack 14.1M
VM_ALLOCATE 16.2M
__DATA 18.5M
__IMAGE 528K
__LINKEDIT 54.3M
__TEXT 154.0M
__UNICODE 544K
mapped file 55.6M
shared memory 308K
=========== =======
TOTAL 1.5G
TOTAL, minus reserved VM space 494.5M
Model: MacBookPro10,1, BootROM MBP101.00EE.B00, 4 processors, Intel Core i7, 2.6 GHz, \
8 GB, SMC 2.3f32
Graphics: Intel HD Graphics 4000, Intel HD Graphics 4000, Built-In, 512 MB
Graphics: NVIDIA GeForce GT 650M, NVIDIA GeForce GT 650M, PCIe, 1024 MB
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x80AD, \
0x484D54333531533642465238432D50422020 Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 \
MHz, 0x80AD, 0x484D54333531533642465238432D50422020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xEF), Broadcom \
BCM43xx 1.0 (5.106.98.81.21)
Bluetooth: Version 4.0.9f8 10405, 2 service, 18 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
Serial ATA Device: APPLE SSD SM768E, 751.28 GB
USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, 0x1a100000 / 2
USB Device: FaceTime HD Camera (Built-in), apple_vendor_id, 0x8510, 0x1a110000 / 3
USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, 0x1d100000 / 2
USB Device: hub_device, 0x0424 (SMSC), 0x2512, 0x1d180000 / 3
USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x0262, 0x1d182000 / \
5 USB Device: BRCM20702 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x1d181000 / 4
USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x8286, 0x1d181300 / 8
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"><div><div></div><div><br></div><div><br></div><div><br></div> <br><div><div>On Aug \
24, 2012, at 7:51 AM, Weiwei Shi <<a \
href="mailto:helprhelp@gmail.com">helprhelp@gmail.com</a>> wrote:</div><br \
class="Apple-interchange-newline"><blockquote type="cite">Hi,<br><br>I am using OS X \
10.8 and have XQuartz installed. I can still reproduce the<br>errors. Do you think R \
for mac will correct that problem?<br><br>To make the problem clear again, if you \
click the "startup" under the top<br>bar (below the "General"), the problem comes \
out; while if you directly<br>click on Startup on the bar menu, it is \
fine.<br><br><br>Thanks,<br><br>Weiwei<br><br><br>On Fri, Aug 24, 2012 at 10:27 AM, \
Simon Urbanek <<a \
href="mailto:Simon.Urbanek@r-project.org">Simon.Urbanek@r-project.org</a><br><blockquote \
type="cite">wrote:<br></blockquote><br><blockquote type="cite">On Aug 24, 2012, at \
8:42 AM, Marc Schwartz <<a \
href="mailto:marc_schwartz@me.com">marc_schwartz@me.com</a>> \
wrote:<br><br><blockquote type="cite"><br>On Aug 24, 2012, at 7:03 AM, Noia Raindrops \
<<a href="mailto:noia.raindrops@gmail.com">noia.raindrops@gmail.com</a>><br></blockquote>wrote:<br><blockquote \
type="cite"><br><blockquote type="cite">Hello,<br><br>I thing you need to install \
X11.app.<br>see: <a href="http://support.apple.com/kb/HT5293">http://support.apple.com/kb/HT5293</a><br></blockquote><br><br>Strictly \
speaking, that is only needed on Mountain Lion, as prior<br></blockquote>versions of \
OSX include X11 on the installation DVD/DMG.<br><blockquote type="cite"><br>I don't \
use the R OSX GUI, but Emacs/ESS. That being said, I can<br></blockquote>replicate \
the problem on Mountain Lion (10.8.1) with XQuartz installed.<br><blockquote \
type="cite"><br>If Weiwei is using ML, then he should install the above, however \
note<br></blockquote>that the name of the app is now XQuartz.app and not X11.app. So \
even if<br>installed, the GUI icon selection will still fail.<br><blockquote \
type="cite"><br>If Weiwei is not using ML, then X11 is available on the \
installation<br></blockquote>DVD on pre-Lion versions of OSX, or if on Lion (10.7) it \
is available from<br>the 'Packages' folder on the install DMG.<br><blockquote \
type="cite"><br>I am adding John Fox as a cc: to this e-mail as in the course \
of<br></blockquote>searching, I noted the R Commander installation instructions \
(<br><a href="http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html">http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html</a>),<br>which \
includes mention of X11.app, but not XQuartz.app for Mountain Lion.<br>So that page \
and related documentation will need to be updated.<br><blockquote \
type="cite"><br></blockquote><br>... and just to be explicit - there is no X11 on OS \
X 10.8 anymore. Apple<br>has removed it from the OS and no longer supports \
it.<br><br>One X11 build is available as 3rd party download from<br><a \
href="http://xquartz.macosforge.org">http://xquartz.macosforge.org</a> but it is no \
longer Apple's X11 as included<br>in previous OS X versions. The current R GUI \
release only supports Apple's<br>X11 (i.e., the autostart etc.; you can still use X11 \
R packages with any<br>X11 implementation).<br><br></blockquote><br><br><br>-- \
<br>Weiwei Shi, Ph.D<br>Research Scientist<br><br><br>"Did you always know?"<br>"No, \
I did not. But I believed..."<br>---Matrix III<br><br><span class="Apple-tab-span" \
style="white-space:pre"> </span>[[alternative HTML version \
deleted]]<br><br>_______________________________________________<br>R-SIG-Mac mailing \
list<br><a href="mailto:R-SIG-Mac@r-project.org">R-SIG-Mac@r-project.org</a><br>https: \
//stat.ethz.ch/mailman/listinfo/r-sig-mac<br></blockquote></div><br></div></body></html>
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