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List:       r-sig-mac
Subject:    Re: [R-SIG-Mac] bug in R.app GUI 1.40 for Mac when running R (Under
From:       William Revelle <lists () revelle ! net>
Date:       2011-07-10 21:18:43
Message-ID: p06240809ca3fc5f53dc9 () [165 ! 124 ! 165 ! 52]
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Simon,
   As usual, you are right.

It was that I could not get the compiled version of mvtnorm and so 
had downloaded the source.  Because I did not have the correct 
fortran compiler, I could not compile it, so I tried using the 
compiled version from 2.13.  That works for RStudio and R under X11, 
but does not work for R.app Gui (for R unstable).

Following your instructions at the att site (finally), I downloaded 
the GNU Fortran 4.2.4 for Mac OS X 10.6  compiler, downloaded the 
source for mvtnorm,  compiled it, and everything works.

Thanks for the patience, sorry for the noise.

Bill


At 3:35 PM -0400 7/10/11, Simon Urbanek wrote:
>Bill,



>I highly doubt that this has anything to do with the GUI as it's not 
>even involved in the trace. Also I can't reproduce it with the 
>latest nightly build even on 10.5.8:
>
>>  library(mvtnorm)
>>  sessionInfo()
>R Under development (unstable) (2011-07-09 r56345)
>Platform: i386-apple-darwin9.8.0/i386 (32-bit)
>
>locale:
>[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
>attached base packages:
>[1] stats     graphics  grDevices utils     datasets  methods   base    
>
>other attached packages:
>[1] mvtnorm_0.9-9991
>>  qmvnorm(.95,sigma=diag(2),tail="both")
>$quantile
>[1] 2.236497
>
>$f.quantile
>[1] 2.5831e-06
>attr(,"error")
>[1] 1e-15
>attr(,"msg")
>[1] "Normal Completion"
>
>$iter
>[1] 11
>
>$estim.prec
>[1] 6.103516e-05
>
>
>However, you setup seems fishy - there is no 1.41 GUI build for 
>R-devel, so are you sure you installed the correct files? If you are 
>not using the nightly builds, then you will need to provide a lot 
>more detail - compilers used, exact configure, BLAS etc. - and then 
>then you may have to look at the backtrace yourself since the CRAN 
>setup doesn't seem at have that issue.
>
>Cheers,
>Simon
>
>
>On Jul 10, 2011, at 11:41 AM, William Revelle wrote:
>
>>  Simon and the other developers of the wonderful R.Gui for the  Mac,
>>
>>  The following code (anything using mvtnorm) reliably crashes R 
>>(under development)  when running from the GUI, but not when 
>>running  from the X11 window or under R-Studio.
>>
>>
>>  I reported this several months ago but was told to wait for a 
>>newer release.   I believe I have the latest versions of R 
>>(unstable), the R GUI, and mvtnorm.
>>
>>>  library(mvtnorm)
>>>  sessionInfo()
>>
>>
>>  R Under development (unstable) (2011-07-08 r56336)
>>  Platform: i386-apple-darwin9.8.0/i386 (32-bit)
>>
>>  locale:
>>  [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>>  attached base packages:
>>  [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>>  other attached packages:
>>  [1] mvtnorm_0.9-9991 psych_1.0.99
>>>  qmvnorm(.95,sigma=diag(2),tail="both")
>>
>>  *** caught bus error ***
>>  address 0x0, cause 'non-existent physical address'
>>
>>  Traceback:
>>  1: .Fortran("mvtdst", N = as.integer(n), NU = as.integer(df), 
>>LOWER = as.double(lower),     UPPER = as.double(upper), INFIN = 
>>as.integer(infin), CORREL = as.double(corrF),     DELTA = 
>>as.double(delta), MAXPTS = as.integer(x$maxpts),     ABSEPS = 
>>as.double(x$abseps), RELEPS = as.double(x$releps),     error = 
>>as.double(error), value = as.double(value), inform = 
>>as.integer(inform),     PACKAGE = "mvtnorm")
>>  2: probval.GenzBretz(algorithm, n, df, lower, upper, infin, corr, 
>>corrF, delta)
>>  3: probval(algorithm, n, df, lower, upper, infin, corr, corrF, delta)
>>  4: mvt(lower = lower, upper = upper, df = 0, corr = corr, delta = 
>>mean,     algorithm = algorithm, ...)
>>  5: pmvnorm(lower = low, upper = upp, mean = args$mean, corr = 
>>args$corr,     sigma = args$sigma, algorithm = algorithm)
>>  6: f(upper, ...)
>>  7: uniroot(pfct, interval = interval)
>>  8: qmvnorm(0.95, sigma = diag(2), tail = "both")
>>
>>
>>  Good luck and thanks for all the great work.
>>
>>  Bill
>>
>>  --
>>  William Revelle		http://personality-project.org/revelle.html
>>  Professor			http://personality-project.org
>>  Department of Psychology             http://www.wcas.northwestern.edu/psych/
>  > Northwestern University	http://www.northwestern.edu/
>>  Use R for psychology                       http://personality-project.org/r
>>  It is 6 minutes to midnight	http://www.thebulletin.org
>>
>>  _______________________________________________
>>  R-SIG-Mac mailing list
>>  R-SIG-Mac@r-project.org
>>  https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>
>>

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