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List:       r-sig-mac
Subject:    [R-SIG-Mac] Rgraphviz alternative (was Re: Rgraphviz installation
From:       Paul Shannon <pshannon () systemsbiology ! org>
Date:       2006-08-21 16:17:26
Message-ID: 200608211617.k7LGHQUA027227 () atlas ! systemsbiology ! net
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Some users of Rgraphviz may be interested in the new Bioconductor package "gaggle".

It presents possibly fewer installation problems, and provides access to
interactive graph display and manipulation from R via the Cytoscape program.  

Installation instructions may be found at

  http://gaggle.systemsbiology.org/docs/geese/r/

Click on the 'Mac OSX' link to the left on this page.

The vignette describes how to broadcast a network from R to Cytoscape:

  http://www.bioconductor.org/packages/1.9/bioc/vignettes/gaggle/inst/doc/gaggle.pdf

Feedback welcome.

 - Paul Shannon
   Institute for Systems Biology
   Seattle


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