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List: r-sig-geo
Subject: Re: [R-sig-Geo] error when trying to use RStudio within GRASS
From: Roger Bivand <Roger.Bivand () nhh ! no>
Date: 2018-12-23 18:42:48
Message-ID: alpine.LFD.2.21.1812231938470.27040 () reclus ! nhh ! no
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On Sun, 23 Dec 2018, Sarah Goslee wrote:
> Hi Carlos,
>
> "This error does not show when using R instead of RStudio."
>
> Then you probably need to use RStudio help channels. You *might* get lucky
> here, but this is an R help list, not RStudio help.
Maybe also try https://lists.osgeo.org/mailman/listinfo/grass-stats, which
has a recent thread on this topic. I just tried Win10/GRASS 7.4/RStudio,
and had no trouble either running rgrass7::initGRASS() in RStudio started
on its own, or running rgrass::parseGRASS() in rstudio started in RStudio
started from the console command line inside GRASS. Consider following up
the thread on that list.
Roger
>
> Sarah
>
> On Sun, Dec 23, 2018 at 7:44 AM Carlos Rodríguez <arrowtado@gmail.com>
> wrote:
>
> > Hi guys,
> >
> > I have the following error when using Rstudio within GRASS 7.2.2
> > (stand-alone version) in Windows 10:
> >
> >
> >
> > Location Spearfish_60
> >
> > > points <- readVECT("archsites")
> >
> > Error in if (get("SYS", envir = .GRASS_CACHE) == "WinNat" && nchar(WN_bat)
> > == :
> >
> > missing value where TRUE/FALSE needed
> >
> >
> > > traceback()
> >
> > 7: parseGRASS(cmd, legacyExec = legacyExec)
> >
> > 6: doGRASS(cmd, flags = flags, ..., parameters = parameters, echoCmd =
> > echoCmd,
> >
> > legacyExec = legacyExec)
> >
> > 5: execGRASS("v.in.ogr", flags = ifelse(ignore.stderr, c("f", "quiet"),
> >
> > "f"), intern = TRUE, ignore.stderr = ignore.stderr)
> >
> > 4: .read_vect_non_plugin(vname = vname, layer = layer, type = type,
> >
> > remove.duplicates = remove.duplicates, ignore.stderr =
> > ignore.stderr,
> >
> > pointDropZ = pointDropZ, driver = driver, with_prj = with_prj,
> >
> > with_c = with_c)
> >
> > 3: tryCatchList(expr, classes, parentenv, handlers)
> >
> > 2: tryCatch({
> >
> > stopifnot(is.logical(plugin) || is.null(plugin))
> >
> > stopifnot(is.logical(ignore.stderr))
> >
> > if (missing(layer))
> >
> > layer <- "1"
> >
> > layer <- as.character(layer)
> >
> > stopifnot(is.logical(with_c))
> >
> > if (!is.null(driver) && driver == "GRASS")
> >
> > plugin <- TRUE
> >
> > if (!requireNamespace("rgdal", quietly = TRUE)) {
> >
> > stop("rgdal not available")
> >
> > }
> >
> > if (is.null(plugin)) {
> >
> > ogrD <- rgdal::ogrDrivers()$name
> >
> > plugin <- "GRASS" %in% ogrD
> >
> > }
> >
> > if (plugin) {
> >
> > res <- .read_vect_plugin(vname = vname, layer = layer,
> >
> > type = type, ignore.stderr = ignore.stderr, pointDropZ =
> > pointDropZ,
> >
> > mapset = mapset)
> >
> > }
> >
> > else {
> >
> > res <- .read_vect_non_plugin(vname = vname, layer = layer,
> >
> > type = type, remove.duplicates = remove.duplicates,
> >
> > ignore.stderr = ignore.stderr, pointDropZ = pointDropZ,
> >
> > driver = driver, with_prj = with_prj, with_c = with_c)
> >
> > }
> >
> > }, finally = {
> >
> > if (get.suppressEchoCmdInFuncOption()) {
> >
> > tull <- set.echoCmdOption(inEchoCmd)
> >
> > }
> >
> > })
> >
> > 1: readVECT("archsites")
> >
> >
> >
> >
> >
> > This error does not show when using R instead of RStudio. I've searched
> > around and tried to implement the fixes proposed for similar issues
> > (unsuccessfully). I feel that it might be a very simple issue, but I am
> > stuck and I will appreciate any help. Here the Sys.getenv() and
> > sessionInfo(), in case there are needed.
> >
> >
> >
> >
> > > Sys.getenv()
> >
> > __COMPAT_LAYER RunAsAdmin DetectorsWin7
> >
> > ADSK_CLM_WPAD_PROXY_CHECK FALSE
> >
> > ALLUSERSPROFILE C:\ProgramData
> >
> > APPDATA C:\Users\...\AppData\Roaming
> >
> > CLICOLOR_FORCE 1
> >
> > CommonProgramFiles C:\Program Files\Common Files
> >
> > CommonProgramFiles(x86) C:\Program Files (x86)\Common Files
> >
> > CommonProgramW6432 C:\Program Files\Common Files
> >
> > COMPUTERNAME
> >
> > ComSpec C:\WINDOWS\system32\cmd.exe
> >
> > DISPLAY :0
> >
> > DriverData C:\Windows\System32\Drivers\DriverData
> >
> > FP_NO_HOST_CHECK NO
> >
> > GDAL_DATA C:/Program Files/R/R-3.5.1/library/rgdal/gdal
> >
> > GEODA_GDAL_DATA C:\Program Files\GeoDa Software\data
> >
> > GEODA_OGR_DRIVER_PATH C:\Program Files\GeoDa Software
> >
> > GFORTRAN_STDERR_UNIT -1
> >
> > GFORTRAN_STDOUT_UNIT -1
> >
> > GRASS_MESSAGE_FORMAT text
> >
> > GRASS_PAGER cat
> >
> > HOME C:/Users/…/Documents
> >
> > HOMEDRIVE C:
> >
> > HOMEPATH \Users\...
> >
> > JRI_HOME
> > C:\Users\...\Documents\R\win-library\3.4\rJava\jri
> >
> > LOCALAPPDATA C:\Users\...\AppData\Local
> >
> > LOGONSERVER \\...
> >
> > MSYS2_ENV_CONV_EXCL R_ARCH
> >
> > NUMBER_OF_PROCESSORS 8
> >
> > OneDrive C:\Users\...\OneDrive
> >
> > OS Windows_NT
> >
> > PATH C:\Program
> >
> >
> > Files\R\R-3.5.1\bin\x64;C:\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;c:\Rtools\gcc-4.6.3\bin;C:\Program
> >
> > Files (x86)\Intel\iCLS Client\;C:\Program
> >
> > Files\Intel\iCLS
> >
> >
> > Client\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program
> >
> > Files\Intel\Intel(R) Management Engine
> >
> > Components\DAL;C:\Program Files\Intel\Intel(R)
> >
> > Management Engine Components\IPT;C:\Program
> > Files
> >
> > (x86)\Intel\Intel(R) Management Engine
> >
> > Components\DAL;C:\Program Files
> > (x86)\Intel\Intel(R)
> >
> > Management Engine Components\IPT;C:\Program
> > Files
> >
> > (x86)\ATI
> > Technologies\ATI.ACE\Core-Static;C:\Program
> >
> > Files\MiKTeX 2.9\miktex\bin\x64\;C:\Program
> >
> > Files\Git\cmd;C:\Program Files
> >
> > (x86)\Skype\Phone\;C:\Program
> >
> > Files\R\R-3.5.1\bin\x64;C:\Program
> >
> >
> > Files\RStudio\bin;C:\WINDOWS\System32\OpenSSH\;C:\Program
> >
> > Files (x86)\Calibre2\;C:\Program
> >
> > Files\Intel\WiFi\bin\;C:\Program Files\Common
> >
> > Files\Intel\WirelessCommon\;C:\Users\...
> > \AppData\Local\Microsoft\WindowsApps
> >
> > PATHEXT
> > .COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC
> >
> > PROCESSOR_ARCHITECTURE AMD64
> >
> > PROCESSOR_IDENTIFIER Intel64 Family 6 Model 60 Stepping 3,
> > GenuineIntel
> >
> > PROCESSOR_LEVEL 6
> >
> > PROCESSOR_REVISION 3c03
> >
> > ProgramData C:\ProgramData
> >
> > ProgramFiles C:\Program Files
> >
> > ProgramFiles(x86) C:\Program Files (x86)
> >
> > ProgramW6432 C:\Program Files
> >
> > PROJ_LIB C:/Program Files/R/R-3.5.1/library/rgdal/proj
> >
> > PSModulePath
> > C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules\
> >
> > PUBLIC C:\Users\Public
> >
> > R_ARCH /x64
> >
> > R_COMPILED_BY gcc 4.9.3
> >
> > R_DOC_DIR C:/PROGRA~1/R/R-35~1.1/doc
> >
> > R_HOME C:/PROGRA~1/R/R-35~1.1
> >
> > R_LIBS_USER C:\Program Files\R\R-3.5.1\library
> >
> > R_MAP_DATA_DIR C:/Program
> > Files/R/R-3.5.1/library/maps/mapdata/
> >
> > R_MAP_DATA_DIR_WORLD C:/Program
> > Files/R/R-3.5.1/library/maps/mapdata/
> >
> > R_USER C:/Users/…/Documents
> >
> > RCRAN C:\Program Files\R\R-3.5.1\bin\x64
> >
> > RMARKDOWN_MATHJAX_PATH C:/Program Files/RStudio/resources/mathjax-26
> >
> > RS_LOCAL_PEER \\.\pipe\30976-rsession
> >
> > RS_RPOSTBACK_PATH C:/Program Files/RStudio/bin/rpostback
> >
> > RS_SHARED_SECRET 63341846741
> >
> > RSTUDIO 1
> >
> > RSTUDIO_CONSOLE_COLOR 256
> >
> > RSTUDIO_CONSOLE_WIDTH 80
> >
> > RSTUDIO_MSYS_SSH C:/Program Files/RStudio/bin/msys-ssh-1000-18
> >
> > RSTUDIO_PANDOC C:/Program Files/RStudio/bin/pandoc
> >
> > RSTUDIO_SESSION_PORT 30976
> >
> > RSTUDIO_USER_IDENTITY …
> >
> > RSTUDIO_WINUTILS C:/Program Files/RStudio/bin/winutils
> >
> > SystemDrive C:
> >
> > SystemRoot C:\WINDOWS
> >
> > TEMP C:\Users\...\AppData\Local\Temp
> >
> > TERM xterm-256color
> >
> > TMP C:\Users\...\AppData\Local\Temp
> >
> > USERDOMAIN …
> >
> > USERDOMAIN_ROAMINGPROFILE …
> >
> > USERNAME …
> >
> > USERPROFILE C:\Users\...
> >
> > windir C:\WINDOWS
> >
> >
> >
> >
> >
> > > sessionInfo()
> >
> > R version 3.5.1 (2018-07-02)
> >
> > Platform: x86_64-w64-mingw32/x64 (64-bit)
> >
> > Running under: Windows >= 8 x64 (build 9200)
> >
> >
> >
> > Matrix products: default
> >
> >
> >
> > locale:
> >
> > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> > States.1252
> >
> > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
> >
> >
> > [5] LC_TIME=English_United States.1252
> >
> >
> >
> > attached base packages:
> >
> > [1] stats graphics grDevices utils datasets methods base
> >
> >
> >
> > other attached packages:
> >
> > [1] dbscan_1.1-2 rgdal_1.3-4 geostatsp_1.7.2
> > Matrix_1.2-14
> >
> > [5] raster_2.6-7 maptools_0.9-3 maps_3.3.0
> > spatstat_1.56-1
> >
> > [9] rpart_4.1-13 nlme_3.1-137 spatstat.data_1.3-1
> > rgrass7_0.1-10
> >
> > [13] XML_3.98-1.16 sp_1.3-1
> >
> >
> >
> >
> >
> >
> >
> > Thanks in advance,
> >
> >
> >
> > William
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > R-sig-Geo mailing list
> > R-sig-Geo@r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >
>
--
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand@nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
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