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List: r-sig-geo
Subject: Re: [R-sig-Geo] Installing rgeos on Mac OS X 10.4 (was Re:
From: Colin Rundel <rundel () gmail ! com>
Date: 2011-10-25 21:18:47
Message-ID: A71708A8-4EE5-4679-A8E8-3C523697407B () gmail ! com
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Glad to hear it, I was just about to suggest checking on updating stringr. I'll \
update the package description to require a current version of stringr.
-Colin
On Oct 25, 2011, at 5:11 PM, Nick Matzke wrote:
> I figured it out, at least enough to get rgeos's gSimplify function to work, which \
> was my original goal; the stringr problem was with 0.2, however I got stringr 0.5 \
> to install by changing the minimum version in DESCRIPTION from R2.11 to R 2.10. ... \
> Thanks for the help!
>
> #############
> # This is how I got rgeos to install in R GUI on my Intel Mac OS X 10.4:
> #############
>
>
> # stringr download source 0.5 from CRAN
> # change DESCRIPTION, change R 2.11 to R 2.10
> # install with:
> install.packages("/Users/nick/Desktop/downloads/stringr", \
> "/Library/Frameworks/R.framework/Resources/library/", NULL, type='source')
> # Update sp to 0.9-91 (manual download from CRAN; my default server didn't have it)
> remove.packages("sp")
>
> install.packages("/Users/nick/Desktop/downloads/sp_0.9-91.tar.gz", \
> "/Library/Frameworks/R.framework/Resources/library/", NULL, type='source')
>
>
>
>
> # Manual install of GEOS 3.3
>
> # Download GEOS 3.3 from:
> http://www.kyngchaos.com/macosx/build/geos
> http://trac.osgeo.org/geos/
>
> ./configure
> make
> sudo make install
>
>
>
> # This installs to /usr/local/bin/geo-config which is an input to the rgeos install
>
> # To find, in Terminal type:
> locate geos-config
>
>
> # I got a crash based on a missing definition of GEOSUnaryUnion_r, so...
> # To get rgeos to install,
>
> # delete from rgeos_topology.c this bit (line 33):
> ================================
> #ifdef HAVEUNARYUNION
> SEXP rgeos_unaryunion(SEXP env, SEXP obj, SEXP id, SEXP byid ) {
> return( rgeos_topologyfunc(env, obj, id, byid, &GEOSUnaryUnion_r) );
> }
> #endif
> ================================
>
> # And this from line 35 of init.c
> ================================
> #ifdef HAVEUNARYUNION
> {"rgeos_unaryunion", (DL_FUNC) &rgeos_unaryunion, 4},
> #endif
> ================================
>
>
> # Then remove failed installs if any
> remove.packages("rgeos")
>
> install.packages("/Users/nick/Desktop/downloads/rgeos", \
> "/Library/Frameworks/R.framework/Resources/library/", NULL, type='source', \
> configure.args="--with-geos-config=/usr/local/bin/geos-config")
>
> library(rgeos)
>
> # (You may have to remove old .o and .so files from previous install attempts...)
>
>
>
> On 10/25/11 1:06 PM, Nick Matzke wrote:
> > Sure! Thanks for looking at this...I've still got an Intel
> > Mac OS X 10.4...yes, I'm in the stone age, but normally I
> > can get things to work...
> >
> >
> > =========================
> > > sessionInfo()
> > R version 2.10.1 (2009-12-14)
> > i386-apple-darwin8.11.1
> >
> > locale:
> > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
> >
> > attached base packages:
> > [1] stats grDevices utils datasets graphics methods base
> >
> > other attached packages:
> > [1] stringr_0.2 plyr_0.1.9
> >
> > loaded via a namespace (and not attached):
> > [1] tools_2.10.1
> > =========================
> >
> >
> > On 10/25/11 12:34 PM, Colin Rundel wrote:
> > > That is odd, it isn't an error that I've seen before. What
> > > version of R are you running and can you check what
> > > version of plyr and stringr you have installed?
> > >
> > > -Colin
> > >
> > >
> > > On Oct 25, 2011, at 3:11 PM, Nick Matzke wrote:
> > >
> > > > Thanks so much! I've almost gotten rgeos to install,
> > > > however I'm getting a peculiar error about a
> > > > (successfully installed) other package, stringr:
> > > >
> > > > "Error : package 'stringr' does not have a name space"
> > > >
> > > > ...any idea what that might be about? Grateful as always!!
> > > > Nick
> > > >
> > > >
> > > > PS Full error message below...
> > > >
> > > > =========================================
> > > > > install.packages("/Users/nick/Desktop/downloads/rgeos",
> > > > > "/Library/Frameworks/R.framework/Resources/library/",
> > > > > NULL, type='source',
> > > > +
> > > > configure.args="--with-geos-config=/usr/local/bin/geos-config")
> > > >
> > > > WARNING: ignoring environment value of R_HOME
> > > > Loading ~/.Rprofile...
> > > > Currently viewed PATH:
> > > > /usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/Applications/dssp:/L \
> > > > ibrary/Frameworks/PROJ.framework/:/Library/Frameworks/PROJ.framework/Programs: \
> > > > /Library/Frameworks/PROJ.framework/Versions/4.6/Headers:/Library/Frameworks/GD \
> > > > AL.framework/Versions/1.6/Programs:/usr/texbin:/Applications/dssp:/Library/Fra \
> > > > meworks/PROJ.framework/:/Library/Frameworks/PROJ.framework/Programs:/Library/F \
> > > > rameworks/PROJ.framework/Versions/4.6/Headers:/Library/Frameworks/GDAL.framework/Versions/1.6/Programs
> > > >
> > > > * installing *source* package ‘rgeos’ ...
> > > > geos-config: /usr/local/bin/geos-config
> > > > GEOS: 3.2.3
> > > > CPPFLAGS: -DHAVEUNARYUNION -I/usr/local/include
> > > > LIBS: -L/usr/local/lib -lgeos
> > > > configure: creating ./config.status
> > > > config.status: creating src/Makevars
> > > > ** libs
> > > > ** arch - i386
> > > > make: Nothing to be done for `all'.
> > > > ** R
> > > > ** inst
> > > > ** preparing package for lazy loading
> > > > Loading required package: plyr
> > > > Error : package 'stringr' does not have a name space
> > > > ERROR: lazy loading failed for package ‘rgeos’
> > > > * removing
> > > > ‘/Library/Frameworks/R.framework/Versions/2.10/Resources/library/rgeos’
> > > >
> > > > Warning message:
> > > > In
> > > > install.packages("/Users/nick/Desktop/downloads/rgeos",
> > > > "/Library/Frameworks/R.framework/Resources/library/", :
> > > > installation of package
> > > > '/Users/nick/Desktop/downloads/rgeos' had non-zero exit
> > > > status
> > > >
> > > > On 10/25/11 1:32 AM, Roger Bivand wrote:
> > > > > On Mon, 24 Oct 2011, Nick Matzke wrote:
> > > > >
> > > > > > Hi all,
> > > > > >
> > > > > > I have a shapefile with a number of line features. I can
> > > > > > load it and plot it. Is there an easy way to downsample or
> > > > > > smooth the shapefile to a coarser resolution?
> > > > >
> > > > > ?gSimplify in rgeos?
> > > > >
> > > > > Roger
> > > > >
> > > > > >
> > > > > > Thanks so much for your help,
> > > > > > Nick
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > >
> > > > --
> > > > ====================================================
> > > > Nicholas J. Matzke
> > > > Ph.D. Candidate, Graduate Student Researcher
> > > >
> > > > Huelsenbeck Lab
> > > > Center for Theoretical Evolutionary Genomics
> > > > 4151 VLSB (Valley Life Sciences Building)
> > > > Department of Integrative Biology
> > > > University of California, Berkeley
> > > >
> > > > Graduate Student Instructor, IB200B
> > > > Principles of Phylogenetics: Ecology and Evolution
> > > > http://ib.berkeley.edu/courses/ib200b/
> > > > http://phylo.wikidot.com/
> > > >
> > > >
> > > > Lab websites:
> > > > http://ib.berkeley.edu/people/lab_detail.php?lab=54
> > > > http://fisher.berkeley.edu/cteg/hlab.html
> > > > Dept. personal page:
> > > > http://ib.berkeley.edu/people/students/person_detail.php?person=370
> > > >
> > > > Lab personal page:
> > > > http://fisher.berkeley.edu/cteg/members/matzke.html
> > > > Lab phone: 510-643-6299
> > > > Dept. fax: 510-643-6264
> > > >
> > > > Cell phone: 510-301-0179
> > > > Email: matzke@berkeley.edu
> > > >
> > > > Mailing address:
> > > > Department of Integrative Biology
> > > > 3060 VLSB #3140
> > > > Berkeley, CA 94720-3140
> > > >
> > > > -----------------------------------------------------
> > > > "[W]hen people thought the earth was flat, they were
> > > > wrong. When people thought the earth was spherical, they
> > > > were wrong. But if you think that thinking the earth is
> > > > spherical is just as wrong as thinking the earth is flat,
> > > > then your view is wronger than both of them put together."
> > > >
> > > > Isaac Asimov (1989). "The Relativity of Wrong." The
> > > > Skeptical Inquirer, 14(1), 35-44. Fall 1989.
> > > > http://chem.tufts.edu/AnswersInScience/RelativityofWrong.htm
> > > >
> > > > _______________________________________________
> > > > R-sig-Geo mailing list
> > > > R-sig-Geo@r-project.org
> > > > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> > >
> > >
> >
>
> --
> ====================================================
> Nicholas J. Matzke
> Ph.D. Candidate, Graduate Student Researcher
>
> Huelsenbeck Lab
> Center for Theoretical Evolutionary Genomics
> 4151 VLSB (Valley Life Sciences Building)
> Department of Integrative Biology
> University of California, Berkeley
>
> Graduate Student Instructor, IB200B
> Principles of Phylogenetics: Ecology and Evolution
> http://ib.berkeley.edu/courses/ib200b/
> http://phylo.wikidot.com/
>
>
> Lab websites:
> http://ib.berkeley.edu/people/lab_detail.php?lab=54
> http://fisher.berkeley.edu/cteg/hlab.html
> Dept. personal page: \
> http://ib.berkeley.edu/people/students/person_detail.php?person=370 Lab personal \
> page: http://fisher.berkeley.edu/cteg/members/matzke.html Lab phone: 510-643-6299
> Dept. fax: 510-643-6264
>
> Cell phone: 510-301-0179
> Email: matzke@berkeley.edu
>
> Mailing address:
> Department of Integrative Biology
> 3060 VLSB #3140
> Berkeley, CA 94720-3140
>
> -----------------------------------------------------
> "[W]hen people thought the earth was flat, they were wrong. When people thought the \
> earth was spherical, they were wrong. But if you think that thinking the earth is \
> spherical is just as wrong as thinking the earth is flat, then your view is wronger \
> than both of them put together."
> Isaac Asimov (1989). "The Relativity of Wrong." The Skeptical Inquirer, 14(1), \
> 35-44. Fall 1989. http://chem.tufts.edu/AnswersInScience/RelativityofWrong.htm
>
> _______________________________________________
> R-sig-Geo mailing list
> R-sig-Geo@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
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