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List:       r-packages
Subject:    [R-pkgs] Package "Rogue": Detect wildcard taxa in sets of phylogenetic trees
From:       "Martin R. Smith" <martin.smith () durham ! ac ! uk>
Date:       2022-01-13 13:37:24
Message-ID: CANotEPuHoVPYJ9W35rQniFmB035fD5Mf-axwUMFv-_T-V-jOYA () mail ! gmail ! com
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Dear R users,

Package "Rogue" has been published on CRAN:
https://CRAN.R-project.org/package=Rogue.

"Rogue" improves phylogenetic analysis by detecting wildcard taxa whose
inconsistent position reduces split support and resolution in consensus
trees.  It implements an effective new information-theoretic approach
(Smith 2022, https://doi.org/10.1093/sysbio/syab099), and provides an R
interface to the established "RogueNaRok" C library (Aberer et al. 2013,
https://doi.org/10.1093/sysbio/sys078).

A vignette demonstrating use on Bayesian posterior tree sets can be found
at https://cran.r-project.org/web/packages/Rogue/vignettes/Bayesian.html.
Questions and bug reports are welcome at https://github.com/ms609/Rogue.

Regards,

Martin Smith

--

*Dr. Martin R. Smith*
Associate Professor in Palaeontology
Durham University
Department of Earth Sciences
Mountjoy Site, South Road, Durham, DH1 3LE United Kingdom

*M*: +44 (0)774 353 7510
*E*: martin.smith@durham.ac.uk

smithlabdurham.github.io
twitter.com/PalaeoSmith

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