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List: lon-capa-cvs
Subject: [LON-CAPA-cvs] cvs: modules /gerd/harvesting finalize.pl
From: www <www () source ! lon-capa ! org>
Date: 2011-09-28 1:37:43
Message-ID: cvswww1317173863 () cvsserver
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www Wed Sep 28 01:37:43 2011 EDT
Modified files:
/modules/gerd/harvesting finalize.pl taxonomy.dat
Log:
UIUC biology taxonomy
Index: modules/gerd/harvesting/finalize.pl
diff -u modules/gerd/harvesting/finalize.pl:1.3 \
modules/gerd/harvesting/finalize.pl:1.4
--- modules/gerd/harvesting/finalize.pl:1.3 Thu Sep 15 21:17:48 2011
+++ modules/gerd/harvesting/finalize.pl Wed Sep 28 01:37:43 2011
@@ -3,6 +3,10 @@
open(IN,"combined_taxonomy.dat");
while (my $line=<IN>) {
chomp($line);
+# Obsolete
+ $line=~s/\:replitrans/\:replication/g;
+#
+
my ($idx,$tax)=split(/\t/,$line);
my %lev1=();
my %lev2=();
@@ -65,6 +69,7 @@
}
}
if (($win2) && ($win2=~/^$win1/)) { undef($win1); }
+ if (($win3) && ($win3=~/^$win1/)) { undef($win1); }
if (($win3) && ($win3=~/^$win2/)) { undef($win2); }
my @winners=();
foreach my $win ($win1,$win2,$win3) {
Index: modules/gerd/harvesting/taxonomy.dat
diff -u modules/gerd/harvesting/taxonomy.dat:1.10 \
modules/gerd/harvesting/taxonomy.dat:1.11
--- modules/gerd/harvesting/taxonomy.dat:1.10 Tue Sep 27 12:42:06 2011
+++ modules/gerd/harvesting/taxonomy.dat Wed Sep 28 01:37:43 2011
@@ -76,17 +76,17 @@
biology:introduction:domains
biology:introduction:phylogeny
biology:introduction:selection
-biology:introduction:scientific_method
+biology:introduction:scientificmethod
biology:introduction:elements
biology:introduction:energy
biology:introduction:bonds
biology:introduction:water
-biology:introduction:pH
-biology:introduction:organic_chemistry
+biology:introduction:ph
+biology:introduction:organicchemistry
biology:introduction:carbohydrates
biology:introduction:lipids
biology:introduction:proteins
-biology:introduction:nucleic_acids
+biology:introduction:nucleicacids
biology:introduction:microscopy
biology:introduction:cells
biology:cells:structure volume,function,structure,cell,area,cell,cells,radius,round,solid,spherical,surface,volume,membrane
@@ -107,14 +107,14 @@
biology:cells:enzymes
biology:cells:signaling
biology:cells:mitosis
-biology:cells:cell_cycle
+biology:cells:cellcycle
biology:cells:meiosis
biology:cells:bacteria
-biology:cells:protein_structure
-biology:cells:protein_function
+biology:cells:proteinstructure
+biology:cells:proteinfunction
biology:genetics:genes
biology:genetics:mendel
-biology:genetics:mendelian_genetics
+biology:genetics:mendeliangenetics
biology:genetics:inheritance
biology:genetics:recombination
biology:genetics:disorders
@@ -125,10 +125,10 @@
biology:genetics:regulation
biology:genetics:viruses
biology:genetics:biotechnology
-biology:genetics:recombinant_dna
+biology:genetics:recombinantdna
biology:genetics:genomics
biology:genetics:bioinformatics
-biology:genetics:hardy_weinberg
+biology:genetics:hardyweinberg
biology:organisms:protists
biology:organisms:plants
biology:organisms:fungi
@@ -218,10 +218,21 @@
ecology:climate
ecology:biomes
ecology:populations
-ecology:life_history
+ecology:lifehistory
ecology:community
ecology:diversity
ecology:ecosystems
ecology:production
ecology:conservation
nutrition
+biochemistry:glycolysis
+biochemistry:gluconeogenesis
+biochemistry:pentose_phosphate_pathway
+biochemistry:citric_acid_cycle
+biochemistry:fatty_acid_catabolism
+biochemistry:amino_acid_catabolism
+biochemistry:urea_cycle
+biochemistry:oxidative_phosphorylation
+biochemistry:biosynthesis
+biochemistry:kinetics
+biochemistry:mechanisms
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