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List:       insight-users
Subject:    Re: [ITK-users] Cardiac Deformation using Segmentation and Registration of Ultrasound Images
From:       Matt McCormick <matt.mccormick () kitware ! com>
Date:       2017-09-08 18:30:53
Message-ID: CALzTN-S50nncJR5Knp2n1BURLjPZPjxhqmPnbYfK9SOgTneNKQ () mail ! gmail ! com
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Hello Thanos,

Yes, to add support for additional image formats, add the
corresponding ITK module to the find_package(ITK COMPONENTS ... call:

  https://github.com/InsightSoftwareConsortium/ITKAnisotropicDiffusionLBR/blob/50acf46da9fa1480eb502a0bb550c36d518893eb/examples/CMakeLists.txt#L8



Thank you for the suggested correction to the usage documentation. It
is added here:

  https://github.com/InsightSoftwareConsortium/ITKAnisotropicDiffusionLBR/pull/12


A Python package is now available for the module. It can be installed via

  python -m pip install --upgrade pip
  python -m pip install itk-anisotropicdiffusionlbr



Thanks,
Matt

On Mon, Aug 14, 2017 at 12:42 PM, thanos thanos <thanosxania@gmail.com> wrote:
> Hello again,
> 
> Matt, thank you for solving the example issue. I tried to use the filter and
> although it worked great for a 2D png image, it failed for a 2D jpg and
> dicom images as well as for a 3D nrrd volume. I got the error "Could not
> create ImageIO" so maybe that has to do with the ImageIOFactory.
> 
> I liked the suggested and accepted values when I run the .exe but maybe to
> avoid confusion you could replace the
> "Weickert diffusion type. Accepted values: Edge, Coherence. Default: Edge."
> with
> Weickert diffusion type. Accepted values: EED cEED CED cCED Isotropic"
> 
> Best regards,
> Thanos
> 
> On Fri, Aug 11, 2017 at 6:55 PM, Matt McCormick <matt.mccormick@kitware.com>
> wrote:
> > 
> > On Fri, Aug 4, 2017 at 9:36 AM, Matt McCormick
> > <matt.mccormick@kitware.com> wrote:
> > > Hi Thanos,
> > > 
> > > On Thu, Aug 3, 2017 at 1:00 PM, thanos thanos <thanosxania@gmail.com>
> > > wrote:
> > > > Hello everyone,
> > > > 
> > > > Dženan, Andras and Matt thank you very much for your answers.
> > > > To be honest I've tried already in the past registration with Slicer
> > > > using
> > > > Demons, B-Splines and also Elastix and Plastimach.
> > > > 
> > > > Dženan, I read your last sentence already many times but I can't really
> > > > understand what you mean by "initializing registration of time point
> > > > n+1 by
> > > > resulting transform from time point n."
> > > > 
> > > > Matt, thank you for sharing your thoughts. I already looked at the
> > > > AnisotropicDiffusionLBR paper and I have also tried the online
> > > > interactive
> > > > figures
> > > > 
> > > > (https://insightsoftwareconsortium.github.io/ITKAnisotropicDiffusionLBR/).
> > > > Seems to work nicely, but I wasn't sure how to build the project. I
> > > > already
> > > > configured my ITK by setting the Module_AnisotropicDiffusionLBR at the
> > > > CMake
> > > > and then I tried to build the CoherenceEnhancingDiffusion from the
> > > > C:\ITK\src\Modules\Remote\AnisotropicDiffusionLBR\examples but I got "
> > > > Cannot open include file: 'CoherenceEnhancingDiffusionFilter.h': No
> > > > such
> > > > file or directory " so I guess I am missing something..
> > > 
> > > Thanks for the note. I will look into this issue and address it next
> > > week.
> > 
> > This is addressed here:
> > 
> > http://review.source.kitware.com/#/c/22567/
> > 
> > https://github.com/InsightSoftwareConsortium/ITKAnisotropicDiffusionLBR/commit/3d9880d5f52c4c37e3b658abc607a13f3c3d9545
> >  
> > I will also create a Python package for the module.
> > 
> > Thanks,
> > Matt
> 
> 
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