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List: insight-users
Subject: Re: [ITK-users] Create ITK Project with CUDA from CMake
From: "D'Isidoro Fabio" <fisidoro () ethz ! ch>
Date: 2017-03-23 17:41:15
Message-ID: 50B858FB5F53124F9E32314E5C1B40944596525D () MBX212 ! d ! ethz ! ch
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Thank you very much Jose,
I can't make your example work, but I am not sure I have been doing the right things. \
If you can help me:
I am using Visual Studio, Windows 10. My directory looks like:
CUDAitk/
src/
CUDAitk.cu
CMakeLists.txt
CUDApart/
CUDApart.cu
CMakeLists.txt
bin/
where
----------- CUDAitk/CUDApart/CMakeLists.txt -----------
FIND_PACKAGE(CUDA REQUIRED)
set (CUDA_NVCC_FLAGS "-g -G -lineinfo" CACHE STRING "nvcc flags" FORCE)
SET (CUDA_VERBOSE_BUILD ON CACHE BOOL "nvcc verbose" FORCE)
SET(LIB_TYPE STATIC) #set the lib type
CUDA_ADD_LIBRARY(CUDAPart ${LIB_TYPE} CUDApart.h CUDApart.cu )
-----------------------------------------------------------------------
----------- src/CMakeLists.txt -----------
project(CUDAitk)
find_package(ITK REQUIRED)
include(${ITK_USE_FILE})
find_package(CUDA REQUIRED)
add_subdirectory(CUDApart )
INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart)
INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart/Debug)
LINK_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart)
LINK_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart/Debug)
cuda_add_executable(CUDAitk CUDAitk.cu ${SOURCES} )
ADD_DEPENDENCIES(CUDAitk CUDApart)
target_link_libraries( CUDAitk CUDApart ${ITK_LIBRARIES} )
-----------------------------------------------------------------------
CUDAitk.cu starts with
#include "CUDApart.h"
#include "itkImage.h"
My issues are:
1) I understand I should NOT create the static library first (with Cmake) and \
then the main project (with another CMake run). Instead, add_subdirectory() should \
assure that the library is generated first with CUDAitk/CUDApart/CMakeLists.txt and \
then the src/CMakeLists.txt is generated after that. Is that correct?
2) However at generation, Cmake does not find the CUDApart library (I need to \
build the created project with Visual Studio first).
3) When I build the main project with Visual Studio (after running CMake), the \
itk library is not recognized (link error)
I would appreciate any feedback that could be useful to figure this whole thing out.
Thank you again!
From: jose alejandro matute flores [mailto:jmatuteflores@gmail.com]
Sent: Dienstag, 21. März 2017 23:40
To: D'Isidoro Fabio <fisidoro@ethz.ch>
Cc: insight-users@itk.org
Subject: Re: [ITK-users] Create ITK Project with CUDA from CMake
Hi,
I use cuda as well, I have a different directory for my cuda parts of the \
application. What I do is create a static library and link it to the application.
It might not be the best way, but it's been working so far.
-------------------cuda/CMakeLists.txt ------------------------
FIND_PACKAGE(CUDA REQUIRED)
set (CUDA_NVCC_FLAGS "-g -G -lineinfo" CACHE STRING "nvcc flags" FORCE)
SET (CUDA_VERBOSE_BUILD ON CACHE BOOL "nvcc verbose" FORCE)
SET(LIB_TYPE STATIC) #set the lib type
CUDA_ADD_LIBRARY(cudaLibName ${LIB_TYPE} visual.h visual.cu<http://visual.cu> )
--------------------------------------------------
and in the main project directory
------- CMakeLists.txt---------------------
find_package(CUDA REQUIRED)
add_subdirectory(cuda)
INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/cuda)
INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/cuda/lib)
LINK_DIRECTORIES(${CMAKE_SOURCE_DIR}/cuda)
LINK_DIRECTORIES(${CMAKE_SOURCE_DIR}/cuda/lib)
cuda_add_executable(CUDAitk ${SOURCES} )
ADD_DEPENDENCIES(CUDAitk cudaLibName)
target_link_libraries( CUDAitk cudaLibName .... )
---------------------------------------------
Best,
José
On Tue, Mar 21, 2017 at 6:49 PM, D'Isidoro Fabio \
<fisidoro@ethz.ch<mailto:fisidoro@ethz.ch>> wrote: Hallo,
I have a .cu CUDA main code which makes use of itk to read and write images.
How can I create a new ITK project with Cmake that include CUDA? I could not find any \
tutorial/description on it. Since I am not familiar with Cmake, I would need an \
understandable and detailed description.
The most basic CmakeLists.txt I could find does not work:
------------------------------
project(CUDAitk)
find_package(ITK REQUIRED)
include(${ITK_USE_FILE})
find_package(CUDA REQUIRED)
CUDA_INCLUDE_DIRECTORIES(${ITK_INCLUDE_DIRS})
cuda_add_executable(CUDAitk CUDAitk.cu)
target_link_libraries(CUDAitk ${ITK_LIBRARIES})
------------------------------
The compling errors I get are like:
error C2244: 'itk::FixedArray<TValue,VLength>::FixedArray': unable to match function \
definition to an existing declaration
CMake Error at CUDAitk_generated_CUDAitk.cu.obj.Debug.cmake:267 (message):
Error generating file
C:/Users/Fabio/Documents/CUDAitk_cpp2/bin/CMakeFiles/CUDAitk.dir//Debug/CUDAitk_generated_CUDAitk.cu.obj
Any help is highly appreciated.
Thank you!
Fabio
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<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Thank \
you very much Jose,<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I \
can't make your example work, but I am not sure I have been doing the right things. \
If you can help me:<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I \
am using Visual Studio, Windows 10. My directory looks like:<o:p></o:p></span></p> <p \
class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">CUDAitk/<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> \
src/<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> \
CUDAitk.cu<o:p></o:p></span></p> <p \
class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> \
CMakeLists.txt<o:p></o:p></span></p> <p \
class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> \
CUDApart/<o:p></o:p></span></p> <p \
class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> &nb \
sp; \
\
CUDApart.cu<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> &nb \
sp; \
\
CMakeLists.txt<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US"> \
bin/<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">where
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">----------- \
CUDAitk/CUDApart/CMakeLists.txt -----------<o:p></o:p></span></p> <p \
class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">FIND_PACKAGE(CUDA \
REQUIRED)<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">set \
(CUDA_NVCC_FLAGS "-g -G -lineinfo" CACHE STRING "nvcc flags" \
FORCE)<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">SET \
(CUDA_VERBOSE_BUILD ON CACHE BOOL "nvcc verbose" FORCE) \
<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">SET(LIB_TYPE \
STATIC) #set the lib type<o:p></o:p></span></p> <p \
class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">CUDA_ADD_LIBRARY(CUDAPart \
${LIB_TYPE} CUDApart.h CUDApart.cu )<o:p></o:p></span></p> <p class="MsoNormal"><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US">-----------------------------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">----------- \
src/CMakeLists.txt -----------<o:p></o:p></span></p> <p class="MsoNormal"><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">project(CUDAitk)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">find_package(ITK \
REQUIRED)<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">include(${ITK_USE_FILE})<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">find_package(CUDA \
REQUIRED)<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">add_subdirectory(CUDApart \
)<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US">INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US">INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart/Debug)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US">LINK_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US">LINK_DIRECTORIES(${CMAKE_SOURCE_DIR}/CUDApart/Debug)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">cuda_add_executable(CUDAitk \
CUDAitk.cu ${SOURCES} )<o:p></o:p></span></p> <p class="MsoNormal"><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">ADD_DEPENDENCIES(CUDAitk \
CUDApart)<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">target_link_libraries( \
CUDAitk CUDApart ${ITK_LIBRARIES} )<o:p></o:p></span></p> <p class="MsoNormal"><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-f \
areast-language:EN-US">-----------------------------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">CUDAitk.cu \
starts with<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">#include \
"CUDApart.h"<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">#include \
"itkImage.h"<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">My \
issues are:<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l1 level1 \
lfo4"><![if !supportLists]><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><span \
style="mso-list:Ignore">1)<span style="font:7.0pt "Times New \
Roman""> </span></span></span><![endif]><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I \
understand I should NOT create the static library first (with Cmake) and then the \
main project (with another CMake run). Instead, add_subdirectory() should assure \
that the library is generated first with CUDAitk/CUDApart/CMakeLists.txt and then the \
src/CMakeLists.txt is generated after that. Is that correct?<o:p></o:p></span></p> <p \
class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l1 level1 lfo4"><![if \
!supportLists]><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><span \
style="mso-list:Ignore">2)<span style="font:7.0pt "Times New \
Roman""> </span></span></span><![endif]><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">However \
at generation, Cmake does not find the CUDApart library (I need to build the created \
project with Visual Studio first).<o:p></o:p></span></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l1 level1 lfo4"><![if \
!supportLists]><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><span \
style="mso-list:Ignore">3)<span style="font:7.0pt "Times New \
Roman""> </span></span></span><![endif]><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">When \
I build the main project with Visual Studio (after running CMake), the itk library is \
not recognized (link error)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I \
would appreciate any feedback that could be useful to figure this whole thing \
out.<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Thank \
you again!<o:p></o:p></span></p> <p class="MsoNormal"><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoListParagraph"><b><span lang="EN-US" \
style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> \
jose alejandro matute flores [mailto:jmatuteflores@gmail.com] <br>
<b>Sent:</b> Dienstag, 21. März 2017 23:40<br>
<b>To:</b> D'Isidoro Fabio <fisidoro@ethz.ch><br>
<b>Cc:</b> insight-users@itk.org<br>
<b>Subject:</b> Re: [ITK-users] Create ITK Project with CUDA from CMake</span><span \
lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<div>
<p class="MsoNormal"><span lang="EN-US">Hi,<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US">I use cuda as well, I have a different \
directory for my cuda parts of the application.<o:p></o:p></span></p> </div>
<div>
<p class="MsoNormal"><span lang="EN-US">What I do is create a static library and link \
it to the application. <o:p></o:p></span></p> </div>
<div>
<p class="MsoNormal"><span lang="EN-US">It might not be the best way, but it's been \
working so far.<o:p></o:p></span></p> </div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"> -------------------cuda/CMakeLists.txt \
------------------------<o:p></o:p></span></p> </div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<pre><span lang="EN-US" style="color:olive">FIND_PACKAGE</span><span \
lang="EN-US">(CUDA<span style="color:silver"> </span><span \
style="color:black">REQUIRED</span>)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US">set</span><span \
lang="EN-US" style="font-family:"Arial",sans-serif;color:silver"> \
</span><span lang="EN-US" \
style="font-family:"Arial",sans-serif">(CUDA_NVCC_FLAGS<span \
style="color:silver"> </span><span style="color:green">"-g</span><span \
style="color:silver"> </span><span style="color:green">-G</span><span \
style="color:silver"> </span><span style="color:green">-lineinfo"</span><span \
style="color:silver"> </span></span><span lang="EN-US" \
style="color:black">CACHE</span><span lang="EN-US" \
style="font-family:"Arial",sans-serif;color:silver"> </span><span \
lang="EN-US" style="color:black">STRING</span><span lang="EN-US" \
style="font-family:"Arial",sans-serif;color:silver"> </span><span \
lang="EN-US" style="font-family:"Arial",sans-serif;color:green">"nvcc</span><span \
lang="EN-US" style="font-family:"Arial",sans-serif;color:silver"> \
</span><span lang="EN-US" \
style="font-family:"Arial",sans-serif;color:green">flags"</span><span \
lang="EN-US" style="font-family:"Arial",sans-serif;color:silver"> \
</span><span lang="EN-US" style="color:black">FORCE</span><span lang="EN-US" \
style="font-family:"Arial",sans-serif">)</span><span \
lang="EN-US"><o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">SET</span><span lang="EN-US" style="color:silver"> </span><span \
lang="EN-US">(CUDA_VERBOSE_BUILD<span style="color:silver"> </span>ON<span \
style="color:silver"> </span><span style="color:black">CACHE</span><span \
style="color:silver"> </span><span style="color:black">BOOL</span><span \
style="color:silver"> </span><span style="color:green">"nvcc</span><span \
style="color:silver"> </span><span style="color:green">verbose"</span><span \
style="color:silver"> </span><span style="color:black">FORCE</span>)<span \
style="color:silver"> </span><o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">SET</span><span lang="EN-US">(LIB_TYPE<span style="color:silver"> \
</span><span style="color:black">STATIC</span>)<span \
style="color:silver"> </span><span \
style="color:green">#set</span><span style="color:silver"> </span><span \
style="color:green">the</span><span style="color:silver"> </span><span \
style="color:green">lib</span><span style="color:silver"> </span><span \
style="color:green">type</span><o:p></o:p></span></pre> <pre><span lang="EN-US" \
style="color:black">CUDA_ADD_LIBRARY</span><span lang="EN-US">(cudaLibName<span \
style="color:silver"> </span><span style="color:navy">${LIB_TYPE}</span><span \
style="color:silver"> </span>visual.h<span style="color:silver"> </span></span><a \
href="http://visual.cu"><span lang="EN-US">visual.cu</span></a><span \
style="color:silver"> </span><span lang="EN-US">)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span \
lang="EN-US">--------------------------------------------------<o:p></o:p></span></pre>
<pre><span lang="EN-US"><o:p> </o:p></span></pre>
<p style="margin:0cm;margin-bottom:.0001pt"><span lang="EN-US" \
style="font-size:10.0pt;font-family:"Courier \
New""><o:p> </o:p></span></p> <p \
style="margin:0cm;margin-bottom:.0001pt"><span lang="EN-US" \
style="font-size:10.0pt;font-family:"Courier New"">and in the main project \
directory <o:p></o:p></span></p>
<p style="margin:0cm;margin-bottom:.0001pt"><span lang="EN-US" \
style="font-size:10.0pt;font-family:"Courier \
New""><o:p> </o:p></span></p> <p \
style="margin:0cm;margin-bottom:.0001pt"><span lang="EN-US" \
style="font-size:10.0pt;font-family:"Courier New"">------- \
CMakeLists.txt---------------------<o:p></o:p></span></p> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">find_package</span><span lang="EN-US">(CUDA<span \
style="color:silver"> </span><span \
style="color:black">REQUIRED</span>)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">add_subdirectory</span><span \
lang="EN-US">(cuda)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">INCLUDE_DIRECTORIES</span><span lang="EN-US">(<span \
style="color:navy">${</span><span style="color:#C09050">CMAKE_SOURCE_DIR</span><span \
style="color:navy">}</span>/cuda)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">INCLUDE_DIRECTORIES</span><span lang="EN-US">(<span \
style="color:navy">${</span><span style="color:#C09050">CMAKE_SOURCE_DIR</span><span \
style="color:navy">}</span>/cuda/lib)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">LINK_DIRECTORIES</span><span lang="EN-US">(<span \
style="color:navy">${</span><span style="color:#C09050">CMAKE_SOURCE_DIR</span><span \
style="color:navy">}</span>/cuda)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">LINK_DIRECTORIES</span><span lang="EN-US">(<span \
style="color:navy">${</span><span style="color:#C09050">CMAKE_SOURCE_DIR</span><span \
style="color:navy">}</span>/cuda/lib)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:black">cuda_add_executable</span><span lang="EN-US">(CUDAitk<span \
style="color:silver"> </span><span style="color:navy">${SOURCES}</span><span \
style="color:silver"> </span>)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">ADD_DEPENDENCIES</span><span lang="EN-US">(CUDAitk<span \
style="color:silver"> </span>cudaLibName)<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span lang="EN-US" \
style="color:olive">target_link_libraries</span><span lang="EN-US">(<span \
style="color:silver"> </span>CUDAitk<span style="color:silver"> \
</span>cudaLibName .... )<o:p></o:p></span></pre> <pre><span \
lang="EN-US"><o:p> </o:p></span></pre> <pre><span \
lang="EN-US">---------------------------------------------<o:p></o:p></span></pre> \
<pre><span lang="EN-US"><o:p> </o:p></span></pre> </div>
<div>
<p class="MsoNormal"><span lang="EN-US">Best,<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US">José<o:p></o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<div>
<p class="MsoNormal"><span lang="EN-US">On Tue, Mar 21, 2017 at 6:49 PM, D'Isidoro \
Fabio <</span><a href="mailto:fisidoro@ethz.ch" target="_blank"><span \
lang="EN-US">fisidoro@ethz.ch</span></a><span lang="EN-US">> \
wrote:<o:p></o:p></span></p> <blockquote style="border:none;border-left:solid #CCCCCC \
1.0pt;padding:0cm 0cm 0cm \
6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0cm;margin-bottom:5.0pt"> <div>
<div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">Hallo,<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">I have \
a .cu CUDA main code which makes use of itk to read and write images. \
<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">How can \
I create a new ITK project with Cmake that include CUDA? I could not find any \
tutorial/description on it. Since I am not familiar with Cmake, I would need an \
understandable and detailed description.<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">The \
most basic CmakeLists.txt I could find does not work:<o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">------------------------------<o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">project(CUDAitk)<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">find_package(ITK REQUIRED)<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">include(${ITK_USE_FILE})<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">find_package(CUDA REQUIRED)<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">CUDA_INCLUDE_DIRECTORIES(${ITK_INCLUDE_DIRS})<o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">cuda_add_executable(CUDAitk CUDAitk.cu)<o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">target_link_libraries(CUDAitk ${ITK_LIBRARIES})<o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US">------------------------------<o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">The \
compling errors I get are like:<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="font-size:9.5pt;font-family:Consolas;color:black">error C2244: \
'itk::FixedArray<TValue,VLength>::FixedArray': unable to match function \
definition to an existing declaration</span><span \
lang="EN-US"><o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-autospace:none"> <span \
lang="EN-US" style="font-size:9.5pt;font-family:Consolas;color:black"> </span><span \
lang="EN-US"><o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-autospace:none"> <span \
lang="EN-US" style="font-size:9.5pt;font-family:Consolas;color:black">CMake Error at \
CUDAitk_generated_CUDAitk.cu.obj.Debug.cmake:267 (message):</span><span \
lang="EN-US"><o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-autospace:none"> <span \
lang="EN-US" style="font-size:9.5pt;font-family:Consolas;color:black"> \
Error generating file</span><span lang="EN-US"><o:p></o:p></span></p> <p \
class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US" style="font-size:9.5pt;font-family:Consolas;color:black"> \
C:/Users/Fabio/Documents/CUDAitk_cpp2/bin/CMakeFiles/CUDAitk.dir//Debug/CUDAitk_generated_CUDAitk.cu.obj</span><span \
lang="EN-US"><o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">Any \
help is highly appreciated.<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span \
lang="EN-US"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US">Thank \
you!<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="color:#888888"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="color:#888888">Fabio<o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="color:#888888"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="color:#888888"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="color:#888888"> <o:p></o:p></span></p> <p class="MsoNormal" \
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="EN-US" \
style="color:#888888"> <o:p></o:p></span></p> </div>
</div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><span lang="EN-US"><br>
_____________________________________<br>
Powered by </span><a href="http://www.kitware.com" target="_blank"><span \
lang="EN-US">www.kitware.com</span></a><span lang="EN-US"><br> <br>
Visit other Kitware open-source projects at<br>
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Kitware offers ITK Training Courses, for more information visit:<br>
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Please keep messages on-topic and check the ITK FAQ at:<br>
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lang="EN-US"><o:p></o:p></span></p> </blockquote>
</div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
</div>
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_____________________________________
Powered by www.kitware.com
Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html
Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php
Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ
Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users
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