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List: insight-users
Subject: Re: [Insight-users] ITK 4.3.2 compilation with python wrappers: problem with gccxml
From: Martin Schober <m.schober () fz-juelich ! de>
Date: 2013-04-30 6:23:51
Message-ID: 517F6377.1020009 () fz-juelich ! de
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Hello,
I tried to compile with gcc 4.4.7 and gcc 4.6.4 In both cases I get this
error:
[ 21%] Generating vcl_complex.xml
In file included from /usr/include/endian.h:60,
from /usr/include/ctype.h:40,
from
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/cctype:44,
from
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h:44,
from
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ios:42,
from
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/ostream:40,
from
/usr/lib/gcc/x86_64-unknown-linux-gnu/4.4.7/../../../../include/c++/4.4.7/iostream:40,
from
/localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkSmartPointer.h:21,
from
/localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkLightObject.h:21,
from
/localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkObject.h:31,
from
/localdata/martin/setup_files/InsightToolkit-4.3.2/Modules/Core/Common/include/itkCommand.h:21,
from
/localdata/martin/setup_files/InsightToolkit-4.3.2/build/Wrapping/Modules/ITKCommon/vcl_complex.cxx:1:
/usr/include/bits/byteswap.h: In function 'unsigned int
__bswap_32(unsigned int)':
/usr/include/bits/byteswap.h:47: error: '__builtin_bswap32' was not
declared in this scope
/usr/include/bits/byteswap.h: In function '__uint64_t
__bswap_64(__uint64_t)':
/usr/include/bits/byteswap.h:111: error: '__builtin_bswap64' was not
declared in this scope
make[2]: *** [Wrapping/Modules/ITKCommon/vcl_complex.xml] Error 1
make[1]: ***
[Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonGccXML.dir/all] Error 2
make: *** [all] Error 2
On 29.04.2013 15:55, Bradley Lowekamp wrote:
> Hello,
>
> I am able to build it on my Redhat 6 system with gcc 4.4.7 and gcc 4.7.2.
>
> I don't think gcc_xml support gcc 4.8.
>
> In my build directory I see files like the following:
>
> ITK-build/Wrapping/Generators/GccXML/gccxml/src/GCC_XML/GCC_XML/Support/GCC/4.?/gccxml_builtins.h
>
> Where the gcc version goes from 4.0 to 4.7.
>
> I believe that a freshly upgraded Arch Linux is close to the opposite side of the \
> stability spectrum as Redhat. So you are quite on the bleeding edge of things. Are \
> you up able to obtain an older compiler that has actually been officially release \
> by gcc?
> Brad
>
> On Apr 29, 2013, at 9:40 AM, Martin Schober <m.schober@fz-juelich.de> wrote:
>
> > What is the gcc version you were able to compile itk with?
> >
> > My configuration options to build itk:
> > BUILD_EXAMPLES OFF
> > BUILD_SHARED_LIBS ON
> > BUILD_TESTING OFF
> > CMAKE_BUILD_TYPE Release
> > INSTALL_WRAP_ITK_COMPATIBILITY ON
> > ITKV3_COMPATIBILITY ON
> > ITK_BUILD_ALL_MODULES ON
> > ITK_USE_SYSTEM_SWIG OFF
> > ITK_WRAP_DIMS 2;3
> > ITK_WRAP_DOC OFF
> > ITK_WRAP_EXPLICIT OFF
> > ITK_WRAP_GCCXML ON
> > ITK_WRAP_JAVA OFF
> > ITK_WRAP_PERL OFF
> > ITK_WRAP_PYTHON ON
> > ITK_WRAP_RUBY OFF
> > ITK_WRAP_SWIGINTERFACE ON
> > ITK_WRAP_TCL OFF
> > ITK_WRAP_complex_double OFF
> > ITK_WRAP_complex_float OFF
> > ITK_WRAP_covariant_vector_doub OFF
> > ITK_WRAP_covariant_vector_floa OFF
> > ITK_WRAP_double OFF
> > ITK_WRAP_float ON
> > ITK_WRAP_rgb_unsigned_char ON
> > ITK_WRAP_rgb_unsigned_short OFF
> > ITK_WRAP_rgba_unsigned_char OFF
> > ITK_WRAP_rgba_unsigned_short OFF
> > ITK_WRAP_signed_char ON
> > ITK_WRAP_signed_long OFF
> > ITK_WRAP_signed_short OFF
> > ITK_WRAP_unsigned_char ON
> > ITK_WRAP_unsigned_long OFF
> > ITK_WRAP_unsigned_short OFF
> > ITK_WRAP_vector_double OFF
> > ITK_WRAP_vector_float ON
> >
> > I tried both versions of gccxml: system and itk built.
> > My gcc version is the system compiler. I installed it with pacman -S gcc on \
> > arch-linux operation system. My cmake version is 2.8.10.2
> >
> >
> > On 29.04.2013 15:14, Bradley Lowekamp wrote:
> > > Hello Martin,
> > >
> > > I was just able to build ITK with ITK_WRAP_PYTHON and shared libraries turned \
> > > on without a problem from the master branch. You indicate that you are using a \
> > > pre-release version of the compiler, so I am a little skeptical that the \
> > > problem is with ITK.
> > > What configuration options did you set?
> > >
> > > Are you using the version of gcc_xml that get built with ITK?
> > >
> > > Is that pre-release version of gcc the system compiler? If you use the system \
> > > compiler do you get the same error?
> > > What version of CMake are you using?
> > >
> > > Thanks for the the additional info,
> > > Brad
> > >
> > > On Apr 29, 2013, at 8:13 AM, Martin Schober <m.schober@fz-juelich.de> wrote:
> > >
> > > > I tried compiling ITK 4.3.2 with ITK python wrappers. I use gcc (GCC)
> > > > 4.8.0 20130411 (prerelease) in arch-linux.
> > > >
> > > > The compilation aborts with the following error:
> > > >
> > > > [ 36%] Generating vcl_complex.xml
> > > > gccxml_cc1plus: error: gccxml_builtins.h: No such file or directory
> > > >
> > > > Are there any ideas to fix this problem?
> > > >
> > > >
> > > >
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_____________________________________
Powered by www.kitware.com
Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html
Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php
Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ
Follow this link to subscribe/unsubscribe:
http://www.itk.org/mailman/listinfo/insight-users
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