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List: fink-devel
Subject: Re: [Fink-devel] missing dependencies from rmod updates
From: Jack Howarth <howarth.at.fink () gmail ! com>
Date: 2016-06-13 14:10:29
Message-ID: CAP5Ds0Cp+qwencTd=KqaG1c96KbQvJ3X+0e=pzV4a-FXZttEOw () mail ! gmail ! com
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BABA,
The cran-stringi-r.info packaging doesn't validate due to the missing
header split-off. You need the change...
Index: cran-stringi-r.info
===================================================================
RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods/
cran-stringi-r.info,v
retrieving revision 1.1
diff -r1.1 cran-stringi-r.info
6c6
< Revision: 1
---
> Revision: 2
34a35,41
> SplitOff: <<
> Package: %N-dev
> Description: Headers for CRAN stringi
> BuildDependsOnly: true
> Depends: %N (=%v-%r)
> Files: lib/R/%type_raw[rversion]/site-library/stringi/include
> <<
to pass fink validation.
Jack
ps You always have to run these packages through the validator because even
minor version updates can result in the CRAN packages starting to
distribute headers.
On Mon, Jun 13, 2016 at 9:22 AM, Jack Howarth <howarth.at.fink@gmail.com>
wrote:
> BABA,
> The download for bioconductor-limma-r33-3.28.5-1 fails. Looks like
> the version is wrong for the 3.3 Bioconductor release and we need the
> change...
>
> Index: rmods/bioconductor-limma-r.info
> ===================================================================
> RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods/
> bioconductor-limma-r.info,v
> retrieving revision 1.5
> diff -r1.5 bioconductor-limma-r.info
> 5c5
> < Version: 3.28.5
> ---
> > Version: 3.28.6
> 12c12
> < Source-MD5: 0692fa171651f40f5749c932796b30a5
> ---
> > Source-MD5: a33ac32d02811c1c4cd51a32276481e1
>
> Jack
>
> On Sun, Jun 12, 2016 at 9:04 PM, 美彦 馬 <babayoshihiko@mac.com> wrote:
>
>> Jack,
>>
>>
>> 2016/06/13 5:52、Jack Howarth <howarth.at.fink@gmail.com> のメール：
>>
>> > Baba,
>> > It appears that during your recent rmod updates to support R 3.3
>> that you neglected to commit the new dependencies on some of the package
>> updates. For example,
>> >
>> > WARNING: While resolving dependency "cran-magrittr-r33" for package
>> "cran-stringr-r33-1.0.0-1", package "cran-magrittr-r33" was not found.
>> > Can't resolve dependency "cran-magrittr-r33" for package
>> "cran-stringr-r33-1.0.0-1" (no matching packages/versions found)
>> >
>> > I believe 'fink selfupdate' for the cvs mode should tell you which
>> files present in your local libs/rmods subdirectory haven't been committed
>> to the tree yet.
>> > Jack
>>
>>
>> Thank you for letting me know. I am now having problems with:
>>
>> bioconductor-preprocessorcore-r.info
>> bioconductor-protgenerics-r.info
>> cran-ggally-r.info
>> cran-magrittr-r.info
>> cran-nloptr-r.info (downloads another source during installation)
>> cran-stringi-r.info
>>
>> I will fix them today.
>>
>> --
>> BABA Yoshihiko
>>
>>
>>
>
[Attachment #5 (text/html)]
<div dir="ltr">BABA,<div> The <font face="Menlo"><span \
style="font-size:11px"><a href="http://cran-stringi-r.info">cran-stringi-r.info</a> \
packaging doesn't validate due to the missing header split-off. You need the \
change...</span></font></div><div><font face="Menlo"><span \
style="font-size:11px"><br></span></font></div><div><div>Index: <a \
href="http://cran-stringi-r.info">cran-stringi-r.info</a></div><div>===================================================================</div><div>RCS \
file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods/<a \
href="http://cran-stringi-r.info">cran-stringi-r.info</a>,v</div><div>retrieving \
revision 1.1</div><div>diff -r1.1 <a \
href="http://cran-stringi-r.info">cran-stringi-r.info</a></div><div>6c6</div><div>< \
Revision: 1</div><div>---</div><div>> Revision: \
2</div><div>34a35,41</div><div>> SplitOff: <<</div><div>> Package: \
%N-dev</div><div>> Description: Headers for CRAN stringi</div><div>> \
BuildDependsOnly: true</div><div>> Depends: %N (=%v-%r)</div><div>> \
Files: lib/R/%type_raw[rversion]/site-library/stringi/include</div><div>> \
<<</div></div><div><br></div><div>to pass fink validation.</div><div> \
Jack</div><div>ps You always have to run these packages through the validator because \
even minor version updates can result in the CRAN packages starting to distribute \
headers.</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jun \
13, 2016 at 9:22 AM, Jack Howarth <span dir="ltr"><<a \
href="mailto:howarth.at.fink@gmail.com" \
target="_blank">howarth.at.fink@gmail.com</a>></span> wrote:<br><blockquote \
class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc \
solid;padding-left:1ex"><div dir="ltr">BABA,<div> The download for <font \
face="Menlo"><span style="font-size:11px">bioconductor-limma-r33-3.28.5-1 fails. \
Looks like the version is wrong for the 3.3 Bioconductor release and we need the \
change...</span></font></div><div><font face="Menlo"><span \
style="font-size:11px"><br></span></font></div><div><div>Index: rmods/<a \
href="http://bioconductor-limma-r.info" \
target="_blank">bioconductor-limma-r.info</a></div><div>===================================================================</div><div>RCS \
file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods/<a \
href="http://bioconductor-limma-r.info" \
target="_blank">bioconductor-limma-r.info</a>,v</div><div>retrieving revision \
1.5</div><div>diff -r1.5 <a href="http://bioconductor-limma-r.info" \
target="_blank">bioconductor-limma-r.info</a></div><div>5c5</div><div>< Version: \
3.28.5</div><div>---</div><div>> Version: 3.28.6</div><div>12c12</div><div>< \
Source-MD5: 0692fa171651f40f5749c932796b30a5</div><div>---</div><div>> Source-MD5: \
a33ac32d02811c1c4cd51a32276481e1</div></div><span class="HOEnZb"><font \
color="#888888"><div><br></div><div> Jack</div></font></span></div><div \
class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div \
class="gmail_quote">On Sun, Jun 12, 2016 at 9:04 PM, 美彦 馬 <span \
dir="ltr"><<a href="mailto:babayoshihiko@mac.com" \
target="_blank">babayoshihiko@mac.com</a>></span> wrote:<br><blockquote \
class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc \
solid;padding-left:1ex">Jack,<br> <br>
<br>
2016/06/13 5:52、Jack Howarth <<a href="mailto:howarth.at.fink@gmail.com" \
target="_blank">howarth.at.fink@gmail.com</a>> のメール：<br> <div><div><br>
> Baba,<br>
> It appears that during your recent rmod updates to support R 3.3 that \
you neglected to commit the new dependencies on some of the package updates. For \
example,<br> ><br>
> WARNING: While resolving dependency "cran-magrittr-r33" for package \
"cran-stringr-r33-1.0.0-1", package "cran-magrittr-r33" was not \
found.<br> > Can't resolve dependency "cran-magrittr-r33" for \
package "cran-stringr-r33-1.0.0-1" (no matching packages/versions \
found)<br> ><br>
> I believe 'fink selfupdate' for the cvs mode should tell you which files \
present in your local libs/rmods subdirectory haven't been committed to the tree \
yet.<br> > Jack<br>
<br>
<br>
</div></div>Thank you for letting me know. I am now having problems with:<br>
<br>
<a href="http://bioconductor-preprocessorcore-r.info" rel="noreferrer" \
target="_blank">bioconductor-preprocessorcore-r.info</a><br> <a \
href="http://bioconductor-protgenerics-r.info" rel="noreferrer" \
target="_blank">bioconductor-protgenerics-r.info</a><br> <a \
href="http://cran-ggally-r.info" rel="noreferrer" \
target="_blank">cran-ggally-r.info</a><br> <a href="http://cran-magrittr-r.info" \
rel="noreferrer" target="_blank">cran-magrittr-r.info</a><br> <a \
href="http://cran-nloptr-r.info" rel="noreferrer" \
target="_blank">cran-nloptr-r.info</a> (downloads another source during \
installation)<br> <a href="http://cran-stringi-r.info" rel="noreferrer" \
target="_blank">cran-stringi-r.info</a><br> <br>
I will fix them today.<br>
<br>
--<br>
BABA Yoshihiko<br>
<br>
<br>
</blockquote></div><br></div>
</div></div></blockquote></div><br></div>
--001a113c81ac713b0c0535297331--
["cran-stringi-r.info" (application/octet-stream)]
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