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List:       fink-commits
Subject:    [cvs] dists/10.9-libcxx/stable/main/finkinfo/libs/rmods bioconductor-genomeinfodb-r-1.6.3.info, NONE
From:       Hanspeter Niederstrasser <nieder () users ! sourceforge ! net>
Date:       2016-06-29 3:05:03
Message-ID: E1bI5oH-0004DH-TO () sfs-ml-3 ! v29 ! ch3 ! sourceforge ! com
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Update of /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv18926

Modified Files:
	bioconductor-genomeinfodb-r.info 
Added Files:
	bioconductor-genomeinfodb-r-1.6.3.info 
Log Message:
get v1.6.3 for r32 so that it builds

Index: bioconductor-genomeinfodb-r.info
===================================================================
RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods/bioconductor-genomeinfodb-r.info,v
 retrieving revision 1.5
retrieving revision 1.6
diff -u -d -r1.5 -r1.6
--- bioconductor-genomeinfodb-r.info	27 Jun 2016 03:04:15 -0000	1.5
+++ bioconductor-genomeinfodb-r.info	29 Jun 2016 03:05:01 -0000	1.6
@@ -1,7 +1,7 @@
 Info2: <<
 
 Package: bioconductor-genomeinfodb-r%type_pkg[rversion]
-Type: rversion (3.3 3.2)
+Type: rversion (3.3)
 Version: 1.8.1
 Revision: 1
 Description: Manipulating chromosome/'seqname' identifiers

--- NEW FILE: bioconductor-genomeinfodb-r-1.6.3.info ---
Info2: <<

Package: bioconductor-genomeinfodb-r%type_pkg[rversion]
Type: rversion (3.2)
Version: 1.6.3
Revision: 1
Description: Manipulating chromosome/'seqname' identifiers
Homepage: http://www.bioconductor.org/packages/3.2/bioc/html/GenomeInfoDb.html
License: Artistic
Maintainer: None <fink-devel@lists.sourceforge.net>
Source: http://www.bioconductor.org/packages/3.2/bioc/src/contrib/GenomeInfoDb_%v.tar.gz
                
Source-MD5: aaec18652bbbe80c76bb0c2cde51eff6
SourceDirectory: GenomeInfoDb
Depends: <<
	r-base%type_pkg[rversion],
	bioconductor-biocgenerics-r%type_pkg[rversion] (>= 0.18.0),
	bioconductor-iranges-r%type_pkg[rversion] (>= 2.4.8),
	bioconductor-s4vectors-r%type_pkg[rversion] (>= 0.8.11)
<<
BuildDepends: <<
	r-base%type_pkg[rversion]-dev
<<
CompileScript: <<
  #!/bin/bash -ev
  export TMPDIR=%b/tmp
  BIN_R=%p/Library/Frameworks/R.framework/Versions/%type_raw[rversion]/Resources/bin/R
  
  pushd ..
  $BIN_R --verbose CMD build --no-build-vignettes GenomeInfoDb
<<
InstallScript: <<
  #!/bin/sh -ev
  BIN_R=%p/Library/Frameworks/R.framework/Versions/%type_raw[rversion]/Resources/bin/R
  
  mkdir -p %i/lib/R/%type_raw[rversion]/site-library
  pushd %b/.. && $BIN_R --verbose CMD INSTALL \
--library=%i/lib/R/%type_raw[rversion]/site-library  GenomeInfoDb <<
DescDetail: <<
The Seqnames package contains data and functions that define and allow
translation between different chromosome sequence naming conventions
(e.g., "chr1" versus "1"), including a function that attempts to place
sequence names in their natural, rather than lexicographic, order.
<<

<<


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