[prev in list] [next in list] [prev in thread] [next in thread] 

List:       fink-commits
Subject:    [cvs] dists/10.7/stable/main/finkinfo/sci pdb2pqr.info,1.6,1.7
From:       William Scott <wgscott () users ! sourceforge ! net>
Date:       2014-11-30 19:02:17
Message-ID: E1Xv9lE-0005pL-5T () sfs-ml-3 ! v29 ! ch3 ! sourceforge ! com
[Download RAW message or body]

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv28940

Modified Files:
	pdb2pqr.info 
Log Message:
version update from upstream. Thanks Jack Howarth for update

Index: pdb2pqr.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/pdb2pqr.info,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -d -r1.6 -r1.7
--- pdb2pqr.info	6 Oct 2014 19:37:33 -0000	1.6
+++ pdb2pqr.info	30 Nov 2014 19:02:15 -0000	1.7
@@ -1,59 +1,42 @@
 Package: pdb2pqr
-Version: 1.7
-Revision: 5
-UseMaxBuildJobs: false
-Source: mirror:sourceforge:%n/%n-%v.tar.gz
-Source-MD5: 058622cb2ca6ca12af04d4f11b272951
+Version: 1.9.0
+Revision: 1
+#Source: mirror:sourceforge:%n/%n-%v.tar.gz
+Source: https://github.com/Electrostatics/apbs-%n/releases/download/%n-%v/%n-src-%v.tar.gz
 +Source-MD5: 3ffba8fd6ae4c33badb31ec07654e39d
 SourceDirectory: %n-%v
-Depends: python27, gcc49-shlibs, numpy-py27
-BuildDepends: python, python27, gcc49
+Depends: gcc49-shlibs, numpy-py27, python27
+BuildDepends: gcc49, scons, python27
 BuildConflicts: g77, g95, fort77
 Description: Converts pdb files to pqr
-NoSetCPPFLAGS: true
-NoSetLDFLAGS: true
+PatchScript: <<
+/usr/bin/find . -type f -name "*.py" -exec perl -pi -e \
's|/usr/bin/python|%p/bin/python2.7|g' {} \; +/usr/bin/find . -type f -name "*.py" \
-exec perl -pi -e 's|/usr/bin/env python|%p/bin/python2.7|g' {} \; +<<
 CompileScript: <<
 #!/bin/bash -efv
-#PATH=%p/bin:%p/sbin:${PATH} ; export PATH
-#source %p/bin/init.sh
-#
-if [[ "%m" != "x86_64" ]]; then
-    export CCPFLAGS="-m32"
-    export LDFLAGS="-m32"
-	perl -pi -e 's|-Wl,-framework -Wl,Python \
                -bundle|%p/lib/python2.7/config/libpython2.7.dylib -m32 -bundle|g' \
                ./configure
-	perl -pi -e 's|-Wl,-framework -Wl,Python \
-bundle|%p/lib/python2.7/config/libpython2.7.dylib  -m32 -bundle|g' \
                ./propka/configure
-else
-	perl -pi -e 's|-Wl,-framework -Wl,Python \
                -bundle|%p/lib/python2.7/config/libpython2.7.dylib  -bundle|g' \
                ./configure
-	perl -pi -e 's|-Wl,-framework -Wl,Python \
                -bundle|%p/lib/python2.7/config/libpython2.7.dylib  -bundle|g' \
                ./propka/configure
-fi
-perl -pi -e 's|fort xlf95 lf95 g95|gfortran|g' ./propka/configure
-perl -pi -e 's|/usr/bin/python|%p/bin/python2.7|g' ./pdb2pka/pka.py
-perl -pi -e 's|/usr/bin/python|%p/bin/python2.7|g' ./src/psize.py
-rm -fr contrib
-./configure --with-max-atoms="1000000"    --without-url  \
                --with-python=%p/bin/python2.7 --with-f77=gfortran 
-if [[ "%m" != "x86_64" ]]; then
-    perl -pi -e 's|-DPACKAGE|-m32 -DPACKAGE|g' Makefile pdb2pka/substruct/Makefile \
tests/Makefile tests/test/Makefile pdb2pka/Makefile propka/Makefile \
                tests/adv-test/Makefile
-fi
-make
-rm -f  pdb2pka/pMC_mult.o  pdb2pka/substruct/Algorithms.o  propka/propkac.o  \
                tests/adv-test/test.o
-rm -r  pdb2pka/pMC_mult_wrap.o   propka/propka.o  propka/propkalib.o   \
tests/test/test.o +%p/bin/python2.7 scons/scons.py BUILD_PDB2PKA=True
+chmod ugo+x propka30/propka.py
 <<
 InstallScript: <<
 #!/bin/zsh -efv
-source %p/bin/init.sh
-PATH=%p/bin:%p/sbin:${PATH} ; export PATH
-
+# Purge pyc files created by InfoTest
+/usr/bin/find . -name "*.pyc" -delete
+# Don't use scons install as it only installs pyc files
 mkdir -p %i/share/pdb2pqr
 cp -R * %i/share/pdb2pqr
-#
+cd %i/share/pdb2pqr
+rm -fr SCon* *scons tools pqr/pdb2pqr.py.in build_config.py
 mkdir -p %i/bin
 echo "#!/bin/zsh -f"           >|   %i/bin/pdb2pqr
 echo "%p/share/pdb2pqr/pdb2pqr.py \"\$@\" " >>|   %i/bin/pdb2pqr
 chmod a+x                            %i/bin/pdb2pqr
 #
 echo "#!/bin/zsh -f"           >|   %i/bin/propka
-echo "%p/share/pdb2pqr/propka/propka \"\$@\" "  >>|   %i/bin/propka
+echo "%p/share/pdb2pqr/propka30/propka.py \"\$@\" "  >>|   %i/bin/propka
 chmod a+x                            %i/bin/propka
 <<
+InfoTest: TestScript: %p/bin/python2.7 scons/scons.py complete-test
 Homepage: http://pdb2pqr.sourceforge.net/
 DescDetail: <<
 PDB2PQR is a Python software package that automates many of the common tasks


------------------------------------------------------------------------------
Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server
from Actuate! Instantly Supercharge Your Business Reports and Dashboards
with Interactivity, Sharing, Native Excel Exports, App Integration & more
Get technology previously reserved for billion-dollar corporations, FREE
http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk
_______________________________________________
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
http://news.gmane.org/gmane.os.apple.fink.cvs


[prev in list] [next in list] [prev in thread] [next in thread]