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List: fink-commits
Subject: [cvs] dists/10.7/stable/main/finkinfo/sci rdkit-postgresql93.info, 1.1, 1.2 rdkit.info, 1.18, 1.19
From: William Scott <wgscott () users ! sourceforge ! net>
Date: 2014-10-31 18:35:59
Message-ID: E1XkH3J-0003Fv-9N () sfs-ml-1 ! v29 ! ch3 ! sourceforge ! com
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Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv12528
Modified Files:
rdkit-postgresql93.info rdkit.info
Log Message:
upstream updates to rdkit
Index: rdkit.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/rdkit.info,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -d -r1.18 -r1.19
--- rdkit.info 6 Oct 2014 19:34:33 -0000 1.18
+++ rdkit.info 31 Oct 2014 18:35:57 -0000 1.19
@@ -1,12 +1,12 @@
Package: rdkit
-Version: 2014.03.1
+Version: 2014.09.1
Epoch: 1
-Revision: 4
+Revision: 1
GCC: 4.0
UseMaxBuildJobs: true
BuildDependsOnly: false
-Source: mirror:sourceforge:rdkit/RDKit_2014_03_1.tgz
-Source-MD5: 7f52d975a38434a7523201a29f66a435
+Source: mirror:sourceforge:rdkit/RDKit_2014_09_1.tgz
+Source-MD5: 416014998949fd28abf6e12980b9960c
Source2: http://www.inchi-trust.org/sites/default/files/inchi-1.04/INCHI-1-API.ZIP
Source2-MD5: 8447bf108af12fe66eecba41bbc89918
Description: Cheminformatics and machine-learning software
@@ -25,15 +25,15 @@
<<
Depends: <<
%N-shlibs (= %e:%v-%r),
- boost1.53.nopython-shlibs,
- boost1.53.python27-shlibs,
+ boost1.55-nopython-shlibs,
+ boost1.55-python27-shlibs,
python27-shlibs,
numpy-py27,
sqlite3-shlibs,
pil-py27
<<
BuildDepends: <<
- boost1.53.python27,
+ boost1.55-python27,
python27,
numpy-py27,
sqlite3-dev,
@@ -51,7 +51,7 @@
cp -r ../INCHI-1-API/INCHI_API/inchi_dll External/INCHI-API/src
# cp %p/share/java/junit/junit.jar External/java_lib/.
cd build
-BOOSTROOT=%p CC=/usr/bin/gcc CXX=/usr/bin/g++ cmake -DRDK_BUILD_INCHI_SUPPORT=ON \
-DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex -DCMAKE_OSX_SYSROOT:PATH="/" \
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" -DCMAKE_INSTALL_PREFIX=%p \
-DCMAKE_INSTALL_NAME_DIR=%p/lib/%n -DCMAKE_PREFIX_PATH=%p \
-DBOOST_LIBRARYDIR=""$BOOSTROOT"/lib" -DBOOST_ROOT="$BOOSTROOT" \
-DBoost_NO_SYSTEM_PATHS=ON \
-DPYTHON_LIBRARY=%p/lib/python2.7/config/libpython2.7.dylib \
-DPYTHON_INCLUDE_DIR=%p/include/python2.7 -DPYTHON_EXECUTABLE=%p/bin/python2.7 .. \
+BOOSTROOT=%p/opt/boost-1_55 CC=/usr/bin/gcc CXX=/usr/bin/g++ cmake \
-DRDK_BUILD_INCHI_SUPPORT=ON -DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex \
-DCMAKE_OSX_SYSROOT:PATH="/" -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" \
-DCMAKE_INSTALL_PREFIX=%p -DCMAKE_INSTALL_NAME_DIR=%p/lib/%n -DCMAKE_PREFIX_PATH=%p \
-DBOOST_LIBRARYDIR=""$BOOSTROOT"/lib" -DBOOST_ROOT="$BOOSTROOT" \
-DBoost_NO_SYSTEM_PATHS=ON \
-DPYTHON_LIBRARY=%p/lib/python2.7/config/libpython2.7.dylib \
-DPYTHON_INCLUDE_DIR=%p/include/python2.7 -DPYTHON_EXECUTABLE=%p/bin/python2.7 .. \
make -j $NUMPROC install #-DRDK_BUILD_SWIG_WRAPPERS=ON
<<
Index: rdkit-postgresql93.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/rdkit-postgresql93.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- rdkit-postgresql93.info 23 May 2014 17:59:27 -0000 1.1
+++ rdkit-postgresql93.info 31 Oct 2014 18:35:57 -0000 1.2
@@ -1,13 +1,12 @@
Package: rdkit-postgresql93
-Version: 2014.03.1
+Version: 2014.09.1
Epoch: 1
-Revision: 3
-Distribution: 10.6, 10.7, 10.8, 10.9
+Revision: 1
GCC: 4.0
UseMaxBuildJobs: true
BuildDependsOnly: false
-Source: mirror:sourceforge:rdkit/RDKit_2014_03_1.tgz
-Source-MD5: 7f52d975a38434a7523201a29f66a435
+Source: mirror:sourceforge:rdkit/RDKit_2014_09_1.tgz
+Source-MD5: 416014998949fd28abf6e12980b9960c
Description: Optional postgresql module for RDkit
DescDetail: <<
This installs the optional postgresql module for RDkit. This is done
@@ -20,8 +19,8 @@
flex
<<
Depends: <<
- boost1.53.nopython-shlibs,
- boost1.53.python27-shlibs,
+ boost1.55-nopython-shlibs,
+ boost1.55-python27-shlibs,
python27-shlibs,
numpy-py27,
sqlite3-shlibs,
@@ -32,7 +31,7 @@
rdkit-shlibs (>= 1:2014.03.1-3)
<<
BuildDepends: <<
- boost1.53.python27,
+ boost1.55-python27,
python27,
numpy-py27,
sqlite3-dev,
@@ -49,7 +48,7 @@
export RDBASE
mkdir build
cd build
-BOOSTROOT=%p CC=/usr/bin/gcc CXX=/usr/bin/g++ cmake -DRDK_BUILD_INCHI_SUPPORT=ON \
-DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex -DCMAKE_OSX_SYSROOT:PATH="/" \
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" -DCMAKE_INSTALL_PREFIX=%p \
-DCMAKE_INSTALL_NAME_DIR=%p/lib/rdkit -DCMAKE_PREFIX_PATH=%p \
-DBOOST_LIBRARYDIR=""$BOOSTROOT"/lib" -DBOOST_ROOT="$BOOSTROOT" \
-DBoost_NO_SYSTEM_PATHS=ON \
-DPYTHON_LIBRARY=%p/lib/python2.7/config/libpython2.7.dylib \
-DPYTHON_INCLUDE_DIR=%p/include/python2.7 -DPYTHON_EXECUTABLE=%p/bin/python2.7 .. \
+BOOSTROOT=%p/opt/boost-1_55 CC=/usr/bin/gcc CXX=/usr/bin/g++ cmake \
-DRDK_BUILD_INCHI_SUPPORT=ON -DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex \
-DCMAKE_OSX_SYSROOT:PATH="/" -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" \
-DCMAKE_INSTALL_PREFIX=%p -DCMAKE_INSTALL_NAME_DIR=%p/lib/rdkit \
-DCMAKE_PREFIX_PATH=%p -DBOOST_LIBRARYDIR=""$BOOSTROOT"/lib" \
-DBOOST_ROOT="$BOOSTROOT" -DBoost_NO_SYSTEM_PATHS=ON \
-DPYTHON_LIBRARY=%p/lib/python2.7/config/libpython2.7.dylib \
-DPYTHON_INCLUDE_DIR=%p/include/python2.7 -DPYTHON_EXECUTABLE=%p/bin/python2.7 .. \
mv lib lib.junk ln -s %p/lib/rdkit lib
cd ..
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