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List:       bioconductor
Subject:    Re: [BioC] BiomaRt Details
From:       Ovokeraye Achinike-Oduaran <ovokeraye () gmail ! com>
Date:       2012-06-28 9:36:24
Message-ID: CAMNjH+KYb-ZTd-vVvCC53nz7h974Md0q=x2G8DTv7zs6qwTqfQ () mail ! gmail ! com
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Thanks a bunch, Steffen.

-Avoks

On Wed, Jun 27, 2012 at 6:04 PM, Steffen Durinck
<durinck.steffen@gene.com> wrote:
> Hi Avoks,
>
> By default biomaRt queries www.biomart.org so these are always in sync.
> You can get the version of the BioMarts by using the listMarts function:
>
>> listMarts()
> =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0biomart
> =A0 =A0 =A0 =A0 =A0 =A0 =A0version
> 1 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0ensembl =
=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 ENSEMBL
> GENES 67 (SANGER UK)
> 2 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0=
snp =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 ENSEMBL
> VARIATION 67 (SANGER UK)
> 3 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0functional_genomics =A0 =A0 =A0 =
=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0ENSEMBL
> REGULATION 67 (SANGER UK)
> 4 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 vega
> VEGA 47 =A0(SANGER UK)
> ....
>
>
> Cheers,
> Steffen
>
>
>
> On Wed, Jun 27, 2012 at 8:05 AM, Ovokeraye Achinike-Oduaran
> <ovokeraye@gmail.com> wrote:
>>
>> Hi all,
>>
>> I've been working with biomaRt 2.12.0 and would like to know what
>> versions of Ensembl, dbSNP, Variation, etc it's using. Is it the exact
>> same as on the web interface (www.biomart.org)?
>>
>> Thanks and regards,
>>
>> Avoks
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor@r-project.org
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>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>

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