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List:       bioconductor
Subject:    [BioC] limma duplicateCorrelation does not return 'all.correlations'
From:       Gordon Smyth <smyth () wehi ! EDU ! AU>
Date:       2006-06-23 10:17:13
Message-ID: 6.2.5.6.1.20060623201528.020f9608 () wehi ! edu ! au
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>Date: Thu, 22 Jun 2006 17:22:17 +0100
>From: "Krys Kelly" <kak28@cam.ac.uk>
>Subject: [BioC] limma duplicateCorrelation does not return
>         'all.correlations'
>To: <bioconductor@stat.math.ethz.ch>
>Content-Type: text/plain
>
>Hi,
>
>I am trying to fit a model when there are duplicate spots on the arrays,
>following section 11.6 of the limma User's Guide. I was getting confusing
>error messages. After some time, I looked at the code for
>duplicateCorrelation. It seems that it does not return 'all.correlations' as
>in the User Guide, but rather 'atanh.correlations'. I realize now that the
>help for duplicateCorrelation gives the correct listing of the values
>returned, but I wonder if the User Guide could be updated at some point.
>
>Thanks
>Krys

Dear Krys,

Thanks for pointing this out. It will be corrected in limma 2.7.6.

Best wishes
Gordon


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