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List:       bioconductor
Subject:    RE: [BioC] LPE errors
From:       "Jain, Nitin" <Nitin.Jain () pfizer ! com>
Date:       2004-11-29 18:40:01
Message-ID: 657D11942721774D8BE305439F3E8E581D80E5 () groamrexm01 ! amer ! pfizer ! com
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Hi Stephanie,

Could you please let me know the error you are getting with MAS 5?
The preprocessing function in LPE package is just IQR normalization 
and log (2) transformation, so you should be able to use any normalization
method with LPE.

Regards,
-N

______________________
Nitin Jain, PhD
Non Clinical Statistics
Pfizer, Inc. (Groton, CT)
Bldg: 260, # 1451
Ph:  (860) 686-2526 (Office)
Fax: (860) 686-6170



-----Original Message-----
From: bioconductor-bounces@stat.math.ethz.ch
[mailto:bioconductor-bounces@stat.math.ethz.ch]On Behalf Of Stephanie
Mewborn
Sent: Monday, November 29, 2004 11:35 AM
To: bioconductor@stat.math.ethz.ch
Subject: [BioC] LPE errors


I posted recently regarding some error messages with LPE and just 
wanted to update in case anyone else was having problems with LPE.  I 
have since been able to run LPE on my rma data files, but not mas5.


Stephanie K. Mewborn, Ph.D.

University of Chicago
Department of Medicine, Section of Cardiology

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