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List:       bioconductor
Subject:    Fwd: [BioC] Affy library and accessing probe data
From:       hrishikesh deshmukh <d_hrishikesh () yahoo ! com>
Date:       2004-11-24 23:40:16
Message-ID: 20041124234016.5653.qmail () web50309 ! mail ! yahoo ! com
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Hi All,

Can anybody help me!

Thanks,
Hrishi



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From: hrishikesh deshmukh <d_hrishikesh@yahoo.com>
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Subject: [BioC] Affy library and accessing probe data
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Hi All,

I have a dataset of 17 .CEL files, i want to find out
all the probes (PM and MM) common to all 17 .CEL files
which fall in the range 200 to 20000.

Affymetrix makes 11-16 probes/gene, some probes ID's
from the 11-16 will satisfy the criteria in the same
.CEL file and also in other, shown below is the
example, now how do i make sure that 1282 in sample
one has the same position as in sample 2. 

Example:         PM     MM       PM      MM
1282_s_at	902	2847.5	3064	1358	
1282_s_at	597	1570	1796	803.5	
1282_s_at	491	1380.8	935.5	611	
1288_s_at	2913	5054	4965.3	3027.3	
1288_s_at	6344	10731.8	11410.5	7839.8	

Also can one access sequence data for the probes?

Please help.

Thanks,
Hrishi

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