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List:       bioconductor
Subject:    [BioC] gcrma 1.0.6 error: couldn't find function
From:       Dick Beyer <dbeyer () u ! washington ! edu>
Date:       2004-03-29 22:49:50
Message-ID: Pine.LNX.4.43.0403291449500.28902 () hymn02 ! u ! washington ! edu
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When I run gcrma, I get the error message:

mydata.gcrma.notfast <- gcrma(mydata.raw, fast = FALSE)
Computing affinities
Attaching package 'matchprobes':


        The following object(s) are masked from package:Biobase :

         combine 

.Done.
Adjusting for optical effect................................Done.
Adjusting for non-specific binding.Error in bg.adjust.fullmodel(pms[, i], mms[, i], \
pm.affinities, mm.affinities,  :   couldn't find function "gcrma.bg.transformation"


I am using R1.9.0beta, and gcrma 1.0.6, on windows 2000.

xtable 1.2-1 
mgu74av2probe 1.0 
mgu74av2cdf 1.4.3 
matchprobes 1.0.2 
splines 1.9.0 
mgu74av2 1.4.0 
GO 1.4.0 
KEGG 1.4.0 
annaffy 1.0.6 
gcrma 1.0.6 
reposTools 1.3.12 
Biobase 1.4.2 
affy 1.4.19 
methods 1.9.0 
stats 1.9.0 
graphics 1.9.0 
utils 1.9.0 
base 1.9.0 

Thanks,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D.	University of Washington
Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
			Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html


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