[prev in list] [next in list] [prev in thread] [next in thread]
List: bioclusters
Subject: RE: [Bioclusters] Questions about setting up InterProScan on clusters
From: "Bernard Li" <bli () bcgsc ! ca>
Date: 2006-09-06 20:53:02
Message-ID: 36BEEFA2DF192944BF71E072F7A5F4652ADC00 () xchange1 ! phage ! bcgsc ! ca
[Download RAW message or body]
Hi Sarah:
I'm not sure if there are already documentations/HOWTO on how to setup
InterProScan with SGE/PBS, but if there aren't, perhaps we can have
someone host a wiki and have these documentations available and linked
directly from your page - in that case at least folks have some idea on
how to get started.
Just my $0.02.
Thanks,
Bernard
> -----Original Message-----
> From: bioclusters-bounces+bli=bcgsc.ca@bioinformatics.org
> [mailto:bioclusters-bounces+bli=bcgsc.ca@bioinformatics.org]
> On Behalf Of Sarah Hunter
> Sent: Tuesday, September 05, 2006 3:59
> To: bioclusters@bioinformatics.org
> Subject: [Bioclusters] Questions about setting up
> InterProScan on clusters
>
> Hi everyone,
>
> I just wanted to post a quick message to the mailing list to
> firstly apologise if there have been
> any problems with setting up InterProScan on your clusters -
> unfortunately, we only have LSF
> in-house and we therefore can't test on other systems like
> SGE or PBS. However, I always try to
> hazard a guess when we get questions about those systems.
> Specifically, the SGE configuration files
> themselves were re-written for SGE6 by me having remote
> access to a user's installation (thank you
> Jenny!) although I soon discovered that that installation had
> its own quirks which were not standard
> for other systems.
>
> The fact that you guys are here supporting each other when
> installing the software on these atypical
> (to EBI, anyway) set-ups is a great help - particularly
> because we only have a limited number of
> people who can answer support emails (i.e. mainly me).
>
> I just want to reiterate that if you have any questions about
> setting InterProScan on your local
> clusters, please email support (at) ebi.ac.uk or interhelp
> (at) ebi.ac.uk. If you don't get a reply
> within a couple of days, hassle us again :-)
>
> At the same time, it would be nice to encourage the
> development of a community of InterProScan users
> who have the program installed on different clusters, so that
> if anyone has a question about a
> queue-specific issue, the community could be consulted and
> alterations tested, rather than relying
> on our limited resources at EBI. What do people think about this?
>
> Sorry if you emailed and didn't get a satisfactory response.
> And thanks for all the hard work you
> have evidentially put in in order to get InterProScan working.
>
> Best regards,
>
> Sarah Hunter
>
> -----------------------------------------
> InterPro Programming Coordinator
> E.B.I.
> Wellcome Trust Genome Campus
> Hinxton
> CB10 1SD
> -----------------------------------------
> _______________________________________________
> Bioclusters maillist - Bioclusters@bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bioclusters
>
_______________________________________________
Bioclusters maillist - Bioclusters@bioinformatics.org
https://bioinformatics.org/mailman/listinfo/bioclusters
[prev in list] [next in list] [prev in thread] [next in thread]
Configure |
About |
News |
Add a list |
Sponsored by KoreLogic