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List: bioclusters
Subject: [Bioclusters] visualization software for Linux
From: Joseph Landman <landman () scalableinformatics ! com>
Date: 2003-07-15 14:16:34
Message-ID: 1058278594.3280.36.camel () protein ! scalableinformatics ! com
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For full blown visualization, have a look at
OpenDX: http://www.opendx.org
Khoros: http://www.khoral.com/khoros/
AVS: http://www.avs.com/
for basic visualization/plotting have a look at
Matlab,
Octave http://www.octave.org
gnuplot,XMGR,etc...
MayaVI http://mayavi.sourceforge.net/
for molecular/genomic visualization have a look at
Artemis: http://www.sanger.ac.uk/Software/Artemis/
VMD: http://www.ks.uiuc.edu
Dino3d: http://cobra.mih.unibas.ch/dino/
Ghemical: http://www.uku.fi/~thassine/ghemical/
PyMood: http://allometra.com/
ViewMol: http://viewmol.sourceforge.net/
for API's...
VTK: http://public.kitware.com/VTK/
and then the symbolic math environments which can usually link to nice
visual packages
Mathematica http://www.wolfram.com
Maxima http://maxima.sourceforge.net/
Maple http://www.maplesoft.com/
...
On Tue, 2003-07-15 at 09:39, Andrew Shewmaker wrote:
> I don't know if anyone has ever used it for biology datasets,
> but from what I have seen ViSit is very capable.
>
> http://www.llnl.gov/VisIt/home.html
>
> Andrew
--
Joseph Landman, Ph.D
Scalable Informatics LLC
email: landman@scalableinformatics.com
web: http://scalableinformatics.com
phone: +1 734 612 4615
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