[prev in list] [next in list] [prev in thread] [next in thread] 

List:       bioc-devel
Subject:    Re: [Bioc-devel] How to fix the error checked in the development version of miRspongeR
From:       Zhang Junpeng <zhangjunpeng411 () gmail ! com>
Date:       2022-09-24 0:42:13
Message-ID: CAJDZ_ubez3Gv9YE6nePShJWer=c=4LKE8M0Js5cXcQORxq6W-A () mail ! gmail ! com
[Download RAW message or body]

Thanks,  Herv=C3=A9 for your reply.

Now, this error has been fixed (
http://bioconductor.org/checkResults/3.16/bioc-LATEST/miRspongeR/).
According to your suggestion, I have just imported the functions used in
miRspongeR from SPONGE. In addition, I have removed the line
'library(SPONGE)' in vignettes.

If possible, I will fork a part of functions in SPONGE instead of importing
it.

Regards,
Junpeng.

Herv=C3=A9 Pag=C3=A8s <hpages.on.github@gmail.com> =E4=BA=8E2022=E5=B9=B49=
=E6=9C=8824=E6=97=A5=E5=91=A8=E5=85=AD 03:00=E5=86=99=E9=81=93=EF=BC=9A

> On 21/09/2022 07:57, Herv=C3=A9 Pag=C3=A8s wrote:
>
> > Just a workaround and not a real solution but maybe try to switch the
> > order of the clusterProfiler and SPONGE reports?
> >
> Oops, I meant "imports", not "reports".
>
> But, again, reducing the huge number of dependencies of both miRspongeR
> and SPONGE should be a priority. Something that you might want to
> discuss/coordinate with the SPONGE folks.
>
> Best,
>
> H.
>
> --
> Herv=C3=A9 Pag=C3=A8s
>
> Bioconductor Core Team
> hpages.on.github@gmail.com
>
>

	[[alternative HTML version deleted]]

_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
[prev in list] [next in list] [prev in thread] [next in thread]