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List:       bioc-devel
Subject:    [Bioc-devel] ERROR in the building report of APAlyzer Dev (1.7.3)
From:       Ruijia Wang <rjwang.bioinfo () gmail ! com>
Date:       2021-08-16 0:24:55
Message-ID: CAFNj_=rc=3tsok71SqYZnGPYKoX-D=PtwTkaVtPbon5iRZKukg () mail ! gmail ! com
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Hi BioC-devel,

I am the author of the Bioconductor package APAlyzer (
https://bioconductor.org/packages/release/bioc/html/APAlyzer.html).  I
current noticed there is an ERROR in the building report of our latest dev
version  (1.7.3) on the page of Bioconductor (
http://bioconductor.org/checkResults/devel/bioc-LATEST/APAlyzer/nebbiolo2-c=
hecksrc.html
).

>
> * Error: object 'fout_annot' not found** Backtrace:*
>
> * 1. =E2=94=94=E2=94=80APAlyzer::PASEXP_IPA(...) test_IPA_analysis.R:10:8*
> * 2. =E2=94=94=E2=94=80Rsubread::featureCounts(...)** 3. =E2=94=94=E2=94=
=80base::file.remove(fout_annot)*


However, I can not repeat this error using R 4.1 and Bioconductor 3.14 on
my end with either *R CMD check* or *BiocCheck("APAlyzer_1.7.3.tar.gz").* A=
nd
I don't recall any of the code updating would trigger the error of
*base::file.remove()*. Could you help me to figure out how to fix/bypass
this issue in the building report of Bioconductor? Thanks in advance!

Best,
Ruijia

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