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List:       bioc-devel
Subject:    Re: [Bioc-devel] [EXT] Bioconductor package DeMixT
From:       "Kern, Lori" <Lori.Shepherd () RoswellPark ! org>
Date:       2021-08-11 10:57:45
Message-ID: MN2PR12MB4094772B0155BFFB6D481991F9F89 () MN2PR12MB4094 ! namprd12 ! prod ! outlook ! com
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Yes just making the change on the devel branch is fine. Thank you.




Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Yang,Peng <PYang7@mdanderson.org>
Sent: Tuesday, August 10, 2021 4:12 PM
To: Kern, Lori <Lori.Shepherd@RoswellPark.org>
Cc: Cao,Shaolong <SCao@mdanderson.org>; bioc-devel@r-project.org <bioc-deve=
l@r-project.org>
Subject: Re: [EXT] Bioconductor package DeMixT


Hi Lori,



Thank you very much for noticing us.



I have added the =91rmarkdown=92 as the dependency package and pushed it in=
to devel brunch with a version bump.  I saw there is no error appears on re=
lease brunch, so may I double check all we need to do is correct the error =
messege in devel brunch?



Thanks,

Peng



From: "Kern, Lori" <Lori.Shepherd@RoswellPark.org>
Date: Tuesday, July 27, 2021 at 12:07 PM
To: "Cao,Shaolong" <SCao@mdanderson.org>, "Yang,Peng" <PYang7@mdanderson.or=
g>
Subject: [EXT] Bioconductor package DeMixT



WARNING: This email originated from outside of MD Anderson. Please validate=
 the sender's email address before clicking on links or attachments as they=
 may not be safe.



Hello Package Maintainer,



We would like to inform you your package is failing on the devel builders of

Bioconductor



bioconductor.org/checkResults/devel/bioc-LATEST/



The ERROR is the result of a change in knitr as announced on the mailing li=
st

back in June.

https://stat.ethz.ch/pipermail/bioc-devel/2021-June/018223.html<https://sec=
ure-web.cisco.com/1b43fILhvRYcx3Q33BisdWvLv6MpBJ1cuEZ63MaKf0ZVz6d3v5sSZtnha=
MoGVfArmgXy2vO2Ni0kX2io0xGjcE2nOTOeVNN7_221k11m3Sb96GdreUchK6dY8ZbBJ4jpL7yR=
3azHiBlxqwDGckzH9KjuDw2lRnmPFxP7ssyqUfbAipgqrMhkEQW21qpPmisoMFafNYnJYrjwfsG=
mNkgKd6l2uYi2mizqTdTghOrtkTajIttnQWsSQO1oixFC9RaSSz_pA2K_JmLBghviTewLztCCBo=
lZViZfEZa6kIORGtJ577x4bJbmv4QJZkwNulq21/https%3A%2F%2Furldefense.com%2Fv3%2=
F__https%3A%2Fstat.ethz.ch%2Fpipermail%2Fbioc-devel%2F2021-June%2F018223.ht=
ml__%3B%21%21PfbeBCCAmug%21yd_pRRmDghsCKTQjIQbkSlzvM2GRtF4X0m2fDfdDUEYKoTYQ=
StDCsb85pKW8ch_i7Q%24>



The ERROR is real and needs to be corrected. Please see the build report fo=
r your

package as the ERROR produced provides explicit instructions for how to

fix. Please remember to always do a version bump in the DESCRIPTION when ma=
king

changes to your package and to push to git.bioconductor.org.



If the ERROR is not corrected in the next month we will deprecate your pack=
age

until the ERROR is resolved with the intention of removing the package in t=
he

next release if the package remains broken.



We appreciate your quick attention to this matter. If you have further ques=
tions

or concerns please ask at bioc-devel@r-project.org



Cheers



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

This email message may contain legally privileged and/or confidential infor=
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