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List:       bioc-devel
Subject:    Re: [Bioc-devel] query regarding bfg on bioconductor repository
From:       "Turaga, Nitesh" <Nitesh.Turaga () RoswellPark ! org>
Date:       2018-10-31 19:38:48
Message-ID: C12025A4-7A2A-4F65-B4DC-8CF61A980421 () roswellpark ! org
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Hi Shweta,

Please hold off making anymore commits to restfulSE. I've noticed some discrepancies \
in your package pre-release and post-release. I'll try to correct it the best I can \
before letting you know. 

The issues seem to be two-fold, duplicate commits and unusually large file package. \
Your BFG cleaning as we spoke off line succeeded in making the package size smaller, \
but it seems to have induced more issues as far as contamination of commit history \
goes. 

I'll work on this in the next day or so, and let you know. 

You can then sync a fresh copy of the package on the Bioconductor git server.

Best,

Nitesh 


> On Oct 30, 2018, at 10:32 AM, Shweta Gopaulakrishnan <reshg@channing.harvard.edu> \
> wrote: 
> Hi Nitesh, 
> 
> Hope you are doing good ! I am working with bfg to reduce the size of "restfulSE" \
> package. I am able to do so with the github repository but not with the \
> bioconductor repository.  
> The steps I am following for the bioconductor one is :
> 
> > git clone --mirror git@git.bioconductor.org:packages/restfulSE
> > java -jar bfg.jar --strip-blobs-bigger-than 30M restfulSE.git
> > cd restfulSE.git
> > git reflog expire --expire=now --all && git gc --prune=now --aggressive
> > git push 
> 
> I get an error : fatal: This operation must be run in a work tree 
> 
> Is there any other way to push changes upstream after bfg ? 
> 
> Thank you! 
> -- 
> Shweta Gopaulakrishnan,
> Bioinformatician,
> Channing Division of Network Medicine,
> Brigham and Women's Health Hospital,
> Boston,MA 02115
> 
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