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List:       bioc-devel
Subject:    Re: [Bioc-devel]  Build error in tokay2: cannot reserve space for vector
From:       Hervé Pagès <hpages () fredhutch ! org>
Date:       2018-05-21 16:58:01
Message-ID: d6512ed6-efb9-1aa4-915a-4c550702e59f () fredhutch ! org
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On 05/21/2018 05:50 AM, Martin Morgan wrote:
> Remember that 32-bit Windows can only address vectors that are less than 
> 2^32 - 1 elements long -- it looks like your example is trying to do 
> more than this, and the solution is to implement a more modest example.

32-bit Windows limits the amount of memory used by a single process to
a little bit less than 3GB. So I think you can actually create vectors
that have more than 2^32 elements as long as the total memory used by
R doesn't exceeds 3GB.

One more thing: since this is a 32-bit Windows issue, you should be able
to reproduce this locally by starting R in 32-bit mode:

   R --arch i386

Hope this helps,

H.

> 
> Martin
> 
> On 05/18/2018 04:05 AM, Sergio Picart Armada wrote:
> > 
> > Dear Bioconductor team,
> > 
> > I'm the maintainer of the FELLA package.
> > Lately the check in tokay2 has failed, see 
> > https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_ \
> > release_bioc-2DLATEST_FELLA_tokay2-2Dchecksrc.html&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcf \
> > hQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-81iJhkqlvXvFLUkNuwd1vRA5eMW-Cf9eDiFgGMLDuk&s=e4cRnI7RwkBDHiDNJodfgLbk-BNKmO6OZsD1MoUHxLc&e= \
> >  
> > Specifically:  Message: At vector.pmt:442 : cannot reserve space for 
> > vector, Out of memory
> > Class:     simpleError/error/conditionIt only happens in tokay2 and I 
> > cannot reproduce this locally.
> > Is this something on the server side or should I take action?
> > 
> > Thank you,
> > Sergi
> > 
> > [[alternative HTML version deleted]]
> > 
> > _______________________________________________
> > Bioc-devel@r-project.org mailing list
> > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo \
> > _bioc-2Ddevel&d=DwIDaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSX \
> > AJJKaaPhzWA&m=-81iJhkqlvXvFLUkNuwd1vRA5eMW-Cf9eDiFgGMLDuk&s=brMBxrnaU_ShvDUNzFa8pJ08ru-VDl6-q5yWF9aSIQc&e= \
> >  
> > 
> 
> 
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages@fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

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