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List:       bioc-devel
Subject:    Re: [Bioc-devel] Rsamtools does not export "path"
From:       "Ou, Jianhong" <Jianhong.Ou () umassmed ! edu>
Date:       2017-12-20 13:13:57
Message-ID: 137FABF871DA9A49B1AAEA1BE854F6E501B7C0C1A1 () ummscsmbx07 ! ad ! umassmed ! edu
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Thank you Herve for the information. =


Yours Sincerely,

Jianhong Ou

TEL: 508-856-5379
LRB 608
Bioinformatician of Bioinformatics core at
Department of Molecular, Cell and Cancer Biology
UMASS Medical School
364 Plantation Street Worcester,
MA 01605

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________________________________________
From: Herv=E9 Pag=E8s [hpages@fredhutch.org]
Sent: Tuesday, December 19, 2017 9:52 PM
To: Ou, Jianhong; bioc-devel@r-project.org
Subject: Re: Rsamtools does not export "path"

Hi Jianhong,

I didn't touch the "path" method defined in Rsamtools, only moved
the path() generic from Rsamtools to BiocGenerics. This broke a few
NAMESPACE in other packages that Marcel and I are in the process of
fixing. The build report should already look much better tomorrow
(Wed 20) and most of the packages that don't install right now because
of these NAMESPACE problems should install again tomorrow (after
running biocLite()).

Sorry for the inconvenience.

H.


On 12/18/2017 09:48 AM, Ou, Jianhong wrote:
> Hi Herve,
>
> The recent update of Rsamtools is using a new method of path. However,
> you did not export this method. Will you export it? Or we should drop
> the dependence of this method?
>
> Yours Sincerely,
>
> Jianhong Ou
>
> TEL: 508-856-5379
> LRB 608
> Bioinformatician of Bioinformatics core at
> Department of Molecular, Cell and Cancer Biology
> UMASS Medical School
> 364 Plantation Street Worcester,
> MA 01605
>
> /_Confidentiality Notice:_/
>
> /This e-mail message, including any attachments, is for the sole use of
> the intended recipient(s) and may contain confidential, proprietary and
> privileged information. Any unauthorized review, use, disclosure or
> distribution is prohibited. If you are not the intended recipient,
> please contact the sender immediately and destroy or permanently delete
> all copies of the original message./
>

--
Herv=E9 Pag=E8s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages@fredhutch.org
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Fax:    (206) 667-1319

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