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List:       bioc-devel
Subject:    Re: [Bioc-devel] biocLite and automatic installing of packages Imports packages
From:       Martin Morgan <martin.morgan () roswellpark ! org>
Date:       2017-09-26 8:10:03
Message-ID: 6ec668fb-a9e6-3e9b-96d6-23acee95d16e () roswellpark ! org
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On 09/25/2017 09:40 PM, Stefan Mutter wrote:
> Hi,
> 
> 
> we are currently developing a package that we want to submit to Bioconductor and I \
> am working on the documentation part at the moment. 
> 
> Our packages requires Rcpp and we have added this dependency under Imports into the \
> DESCRIPTION file. What I am wondering is whether in this situation biocLite would \
> automatically install Rcpp for users that haven't installed the package yet? Or do \
> I need to inform users to install Rcpp first and then use the biocLite command? I \
> have read through your documentation online, but it wasn't clear to me whether \
> biocLite automatically install dependencies listed in Imports.

biocLite() uses install.packages but with appropriate repositories; 
install.packages() installs dependencies (Depends: and Imports: and 
LinkingTo: by default) so no need for the user to separately install Rcpp.

Martin

> 
> 
> Thanks for your help.
> 
> 
> Cheers,
> 
> Stefan
> 
> 	[[alternative HTML version deleted]]
> 
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