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List:       bioc-devel
Subject:    [Bioc-devel] SnpSet Creation Function Prototype Not Valid R Code
From:       Dario Strbenac <dstr7320 () uni ! sydney ! edu ! au>
Date:       2017-08-24 3:00:02
Message-ID: DM5PR01MB325918C0CC3CC9D85BCF71EDCD9A0 () DM5PR01MB3259 ! prod ! exchangelabs ! com
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Good day,

It's formatted in monospace font, implying that it's R code, but

new('SnpSet', phenoData = [AnnotatedDataFrame], experimentData = [MIAME], annotation \
= [character], protocolData = [AnnotatedDataFrame], call = [matrix], callProbability \
= [matrix], ...)

is just pseudocode. Also, object creation using new is discouraged. Perhaps SnpSet \
could have a proper constructor, like ExpressionSet does?

--------------------------------------
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia

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