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List:       bioc-devel
Subject:    Re: [Bioc-devel] missing font causes build warning on bioc release	packages
From:       Dan Tenenbaum <dtenenba () fredhutch ! org>
Date:       2015-05-27 17:21:01
Message-ID: 67776809.2800012.1432747261825.JavaMail.root () fredhutch ! org
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Hi,


----- Original Message -----
> From: "Ludwig Geistlinger" <Ludwig.Geistlinger@bio.ifi.lmu.de>
> To: bioc-devel@r-project.org
> Sent: Wednesday, May 27, 2015 6:54:33 AM
> Subject: [Bioc-devel] missing font causes build warning on bioc release	packages
> 
> Dear Bioc Team,
> 
> As far as I am aware this applies to the web pages of all released
> bioc
> packages
> 
> http://www.bioconductor.org/packages/release/bioc/html/<package>.html
> 
> The new tags on the head of the page issue a build warning that is
> caused
> during check on moscato2:
> 
> The warning reads:
> 
> * checking PDF version of manual ...Warning: running command
> '"E:/biocbld/bbs-3.1-bioc/R/bin/x64/Rcmd.exe" Rd2pdf  --batch
> --no-preview
> --build-dir="E:/biocbld/bbs-3.1-bioc/tmpdir/RtmpITv7Be/Rd2pdf18341e1a398"
> --no-clean -o  <package-vignette>.pdf
> "E:/biocbld/bbs-3.1-bioc/meat/edgeR.buildbin-libdir/<package>"' had
> status
> 1
> WARNING
> LaTeX errors when creating PDF version.
> This typically indicates Rd problems.
> LaTeX errors found:
> !pdfTeX error: pdflatex.EXE (file ts1-zi4r): Font ts1-zi4r at 540 not
> found
> ==> Fatal error occurred, no output PDF file produced!
> 
> Thanks for fixing!
> 

This has been fixed in today's builds. 

For example: http://bioconductor.org/checkResults/release/bioc-LATEST/EnrichmentBrowser/moscato2-buildsrc.html


PS., in future please include specific package names so we can track down the issues \
(in this case they did _not_ occur in all packages).

Thanks,
Dan



> Best,
> Ludwig
> 
> 
> --
> Dipl.-Bioinf. Ludwig Geistlinger
> 
> Lehr- und Forschungseinheit für Bioinformatik
> Institut für Informatik
> Ludwig-Maximilians-Universität München
> Amalienstrasse 17, 2. Stock, Büro A201
> 80333 München
> 
> Tel.: 089-2180-4067
> eMail: Ludwig.Geistlinger@bio.ifi.lmu.de
> 
> _______________________________________________
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 

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