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List:       bioc-devel
Subject:    Re: [Bioc-devel] vignettes is missing after build
From:       Guangchuang Yu <guangchuangyu () gmail ! com>
Date:       2015-02-10 12:26:32
Message-ID: CABqCPqSF08f2WtSy2szFfzgUz6evbv1OOECKfvT6Nxy=O0UdQg () mail ! gmail ! com
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Dear Martin,

Thanks for your quick reply. The typo has been fixed and the pdf file is
removed.

Best Regards,
Guangchuang


On Tue, Feb 10, 2015 at 8:13 PM, Martin Morgan <mtmorgan@fredhutch.org>
wrote:

> On 02/10/2015 01:51 AM, Guangchuang Yu wrote:
>
>> Dear all,
>>
>> I found the vignette of my package DOSE is missing,
>> http://bioconductor.org/packages/devel/bioc/html/DOSE.html.
>>
>> I am pretty sure the I don't have .Rbuildignore file and the vignette,
>> DOSE.Rnw, passing the build with knit2pdf.
>>
>> Not only it is missing in the bioconductor website, but also missing after
>> R CMD build in my computer.
>>
>> Does anyone have any idea?
>>
>
> Hi Guangchuang --
>
> If I do
>
> DOSE/vignettes$ R CMD Sweave DOSE.Rnw
> Bioconductor version 3.1 (BiocInstaller 1.17.5), ?biocLite for help
> Error: Vignette engine package not specified
> Execution halted
>
> Hmm.... I think in your LaTeX document you need '::' rather than ':' in
>
> % \VignetteEngine{knitr::knitr}
>
> Also, the DOSE.pdf should be removed from the vignette/ directory (it gets
> built!).
>
> Martin
>
>
>>
>> Best Regards,
>> Guangchuang Yu
>>
>>         [[alternative HTML version deleted]]
>>
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>>
>
> --
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
>
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> Phone: (206) 667-2793
>

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