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List:       bioc-devel
Subject:    Re: [Bioc-devel] Need help on biomaRt
From:       "Julie Zhu" <julie.zhu () umassmed ! edu>
Date:       2009-05-29 15:42:40
Message-ID: C6457AB0.5082%julie.zhu () umassmed ! edu
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Florian,

Thank you very much for the great news!

Best regards,

Julie

On 5/29/09 11:33 AM, "Florian Hahne" <fhahne@fhcrc.org> wrote:

> The problem was fixed by Duncan Temple Lang in the latest RCurl
> version 0.97-3 which is available from Omegahat
> (http://www.omegahat.org/RCurl/
> )
> The automatic updates on our build systems should pick this up any
> time now, so all you need is patience for one or two more days :)
> Florian
> 
> 
> On 28.05.2009, at 11:32, Julie Zhu wrote:
> 
>> Hi,
>> 
>> With the help from Herve, we found out that the devel version of
>> biomaRt is
>> broken with the new Rcurl version 095-1. This is confirmed by the
>> build
>> system:
>> 
>> http://bioconductor.org/checkResults/2.5/bioc-LATEST/biomaRt/wilson2-buildsr
>> c.html
>> 
>> As you can see, it's broken on Linux and Mac OS. It looks OK
>> on the Window build machine because this machine is using an
>> older version of RCurl (0.94-1).
>> 
>> I am in the process of submitting a contributed package that relies on
>> biomaRt and my package won't be passed to the reviewers until
>> biomaRt is
>> fixed. Could someone please fix the devel version of biomaRt? Thanks
>> a lot
>> for your kind help!
>> 
>> Best regards,
>> 
>> Julie
>> 
>> 
>> *******************************************
>> Julie Zhu, Ph.D
>> Research Assistant Professor
>> Program Gene Function and Expression
>> University of Massachusetts Medical School
>> 364 Plantation Street, Room 613
>> Worcester, MA 01605
>> http://www.umassmed.edu/pgfe/faculty/zhu.cfm
>> 
>> _______________________________________________
>> Bioc-devel@stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
>

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